☆47Oct 5, 2026Updated this week
Alternatives and similar repositories for SimplexFold
Users that are interested in SimplexFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake implementation of protein structure alignment software DaliLite v5☆16Mar 12, 2025Updated last year
- Biomolecular co-folding, binder filtering, and nanobody design☆92Jun 28, 2026Updated 3 months ago
- ☆15Sep 4, 2026Updated last month
- Feynman-Kac steering for controllable protein diffusion☆39Aug 16, 2026Updated last month
- ☆32Jun 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆96Jul 10, 2025Updated last year
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆56Aug 2, 2025Updated last year
- Minimal AlphaFold☆56Aug 24, 2024Updated 2 years ago
- ☆34Dec 6, 2025Updated 10 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆56Jun 22, 2026Updated 3 months ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 9 months ago
- Molstar Stories Webapp☆22Sep 10, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for "Calibrating Generative Models" by Henry Smith, Nathaniel Diamant, and Brian Trippe☆51Aug 8, 2026Updated 2 months ago
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆12Oct 2, 2025Updated last year
- ☆84Jun 10, 2026Updated 4 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆62Jun 3, 2024Updated 2 years ago
- Code for generating ensembles with IDPFold2☆27Oct 1, 2026Updated last week
- Code for designing biased protein states☆88Apr 15, 2026Updated 5 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆73Apr 13, 2026Updated 5 months ago
- Deep generative modeling of protein structural ensembles☆41May 27, 2026Updated 4 months ago
- PeptoneBench: evaluating protein ensembles across the order-disorder continuum☆22Mar 24, 2026Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A minimal PyTorch re-implementation of AlphaFold2's model & training☆641Updated this week
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆94Jun 1, 2026Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆75Jan 31, 2024Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆84Aug 27, 2026Updated last month
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Metadiffusion implemented in Boltz-2☆25Feb 23, 2026Updated 7 months ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆47Nov 14, 2025Updated 10 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 3 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆190Apr 21, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆31Sep 13, 2024Updated 2 years ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆168Mar 28, 2026Updated 6 months ago
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 3 years ago
- The gzip classification method implemented for molecule classification.☆56Nov 15, 2025Updated 10 months ago
- ☆18Aug 28, 2025Updated last year
- ☆42Aug 20, 2026Updated last month
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago