Big-Life-Lab / PHES-ODM
The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.
☆55Updated 3 weeks ago
Alternatives and similar repositories for PHES-ODM:
Users that are interested in PHES-ODM are comparing it to the libraries listed below
- Wastewater Epidemic Model☆14Updated 8 months ago
- Disease outbreak reconstruction from epidemiological and genetic data☆31Updated 4 months ago
- ☆19Updated last month
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆18Updated this week
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆47Updated this week
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆20Updated last year
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Racmacs R package for performing antigenic cartography☆20Updated 7 months ago
- Inference framework for serological data☆16Updated this week
- Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975☆15Updated 4 years ago
- Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016☆58Updated 6 years ago
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- PhyDyn: Epidemiological modelling in BEAST☆22Updated 2 years ago
- Resources for Influenza Research☆23Updated 2 years ago
- ☆26Updated last year
- ☆14Updated last year
- Species richness with high diversity☆68Updated last year
- ☆26Updated 3 years ago
- Four-in-one value pack of host-virus association data☆23Updated 2 years ago
- An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources☆59Updated 2 years ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆46Updated 3 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆16Updated 2 years ago
- R tools for integrating phylogenies and ecology☆34Updated last year
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆15Updated this week
- Website for the Riffomonas Reproducible Research Tutorial Series☆35Updated 7 months ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆54Updated 8 months ago
- ☆21Updated 6 months ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated 2 weeks ago
- Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques☆20Updated 2 years ago