ToruNiina / libasd
C++11/Python3 library to read/write High Speed AFM data file
☆13Updated 2 years ago
Alternatives and similar repositories for libasd:
Users that are interested in libasd are comparing it to the libraries listed below
- Prepare topology and coordinate file for CG models in Genesis.☆11Updated 7 months ago
- general purpose coarse-grained molecular dynamics simulation package☆33Updated 2 years ago
- generate pseudo-AFM image file from structure file☆13Updated 11 months ago
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆21Updated 3 weeks ago
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆32Updated 2 months ago
- 分子シミュレーションの理論や関連するトピックをまとめたノート☆24Updated last year
- 分子動力学法ステップ・バイ・ステップ☆15Updated 5 years ago
- Source code for HOLE program.☆35Updated 8 months ago
- An example of how to write a plugin for OpenMM☆31Updated last year
- Coarse-grained molecular model of DNA (LAMMPS plugin)☆17Updated 3 years ago
- COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM☆12Updated last year
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆78Updated 7 months ago
- Sire Molecular Simulations Framework☆95Updated last year
- MDToolbox: A MATLAB/Octave toolbox for statistical analysis of molecular dynamics trajectories☆24Updated 5 years ago
- Software package for spin dynamics☆10Updated 2 weeks ago
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆11Updated last year
- helPME: an efficient library for particle mesh Ewald☆29Updated 3 years ago
- Create coarse grain Martini input files for Gromacs from (atomistic) pdb files.☆34Updated 2 years ago
- Source code and input files associated to the paper "Targeted free energy perturbation revisited: Accurate free energies from mapped refe…☆13Updated 3 years ago
- A Python toolkit for the analyis of lipid membrane simulations☆30Updated last month
- NAMD's psfgen + Python improvements☆15Updated 7 months ago
- A new repository (with deleted history) in preparation for release 3.0 of SIMPLE☆24Updated this week
- Tinker-HP: High-Performance Massively Parallel Evolution of Tinker on CPUs & GPUs☆87Updated 5 months ago
- 分子動力学法の理論と実装(集中講義ノート)☆30Updated 2 years ago
- Quantum Refinement Module☆22Updated last week
- Automatically exported from code.google.com/p/acpype☆11Updated 9 years ago
- Fast PBC wrapping and unwrapping for VMD☆23Updated 4 months ago
- A fully GPU-accelerated molecular dynamics program for the Martini force field☆34Updated last year
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- The MDAnalysis Toolkits Registry☆17Updated last week