Alternatives and similar repositories for aitom

Users that are interested in aitom are comparing it to the libraries listed below

• xulabs / projects
  ☆42Updated 2 years ago
• bowang-lab / MAESTER
  Masked Autoencoder Guided Segmentation at Pixel Resolution
  ☆15Updated last year
• anmartinezs / polnet
  Generates synthetic datasets for Cryo-Electron Tomography
  ☆28Updated 2 weeks ago
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated last week
• compSPI / cryoAI
  ☆43Updated last year
• IsoNet-cryoET / IsoNet
  Self-supervised learning for isotropic cryoET reconstruction
  ☆81Updated 5 months ago
• anmartinezs / pyseg_system
  De novo analysis for cryo-electron tomography
  ☆21Updated 7 months ago
• CellArchLab / MemBrain
  ☆31Updated 2 years ago
• marrlab / SHAPR
  SHAPR - An AI approach to predict 3D cell shapes from 2D microscopic images
  ☆14Updated 2 years ago
• zhonge / cryodrgn_empiar
  ☆30Updated 4 years ago
• SMLC-NYSBC / TARGET-VAE
  Source code for "Unsupervised Object Representation Learning using Translation and Rotation Group Equivariant VAE," in pytorch. NeurIPS 2…
  ☆17Updated 2 years ago
• phonchi / Computational-CryoET
  A curated list of awesome computational cryo-ET methods.
  ☆60Updated 8 months ago
• neel-dey / AnyStar
  [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentation
  ☆16Updated last year
• BioinfoMachineLearning / cryoppp
  The programs of creating cryo-EM particle picking datasets
  ☆73Updated last year
• MLI-lab / DeepDeWedge
  Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms
  ☆39Updated this week
• rsanchezgarc / micrograph_cleaner_em
  Cryo-EM micrograph segmentation through deep learning
  ☆21Updated 3 weeks ago
• ml-struct-bio / cryodrgn
  Neural networks for cryo-EM reconstruction
  ☆338Updated this week
• marrlab / DISPR
  A Diffusion Model Predicts 3D Shapes from 2D Microscopy Images
  ☆38Updated 2 years ago
• tbepler / topaz
  Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled …
  ☆189Updated last week
• phonchi / Computational-CryoEM
  A curated list of awesome computational cryo-EM methods.
  ☆126Updated 3 months ago
• teamtomo / teamtomo-site-archive
  A collaborative knowledge sharing platform for the cryo-ET community
  ☆20Updated 10 months ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆96Updated this week
• Zhang-hn1125 / REST
  ☆16Updated 8 months ago
• Limingxing00 / MitoEM2021-Challenge
  Accepted by ISBI 2022 (Oral)
  ☆39Updated 3 years ago
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆28Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 7 months ago
• kuixu / awesome-cryoem
  A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
  ☆145Updated 4 years ago
• cramerlab / warp
  ☆54Updated last year
• jianlin-cheng / CryoSegNet
  Customized foundational image segmentation models for picking protein particles in cryo-EM images
  ☆18Updated last month
• teamtomo / membrain-seg
  membrane segmentation in 3D for cryo-ET
  ☆74Updated last month