Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
☆205Jan 27, 2026Updated last month
Alternatives and similar repositories for topaz
Users that are interested in topaz are comparing it to the libraries listed below
Sorting:
- Python programs for electron microscopy☆130Jan 15, 2026Updated last month
- Image-processing software for cryo-electron microscopy☆521Updated this week
- ☆46Feb 20, 2026Updated last week
- A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.☆155Jan 25, 2021Updated 5 years ago
- ☆25Updated this week
- ☆129Jun 18, 2025Updated 8 months ago
- ☆19Feb 3, 2025Updated last year
- Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography☆58Oct 3, 2025Updated 4 months ago
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆25Feb 9, 2026Updated 2 weeks ago
- ☆53Aug 19, 2024Updated last year
- Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset☆32Sep 18, 2025Updated 5 months ago
- Self-supervised learning for isotropic cryoET reconstruction☆90Dec 29, 2024Updated last year
- ☆17Oct 21, 2024Updated last year
- Customized foundational image segmentation models for picking protein particles in cryo-EM images☆20Jan 7, 2026Updated last month
- Neural networks for cryo-EM reconstruction☆368Feb 16, 2026Updated last week
- STAR file I/O in Python☆55Nov 24, 2025Updated 3 months ago
- A scientific image processing software suite with a focus on CryoEM and CryoET☆165Feb 22, 2026Updated last week
- cryo-ET particle picking by representation and metric learning☆42Nov 24, 2025Updated 3 months ago
- A CNN for denoising cryo-EM images☆13Dec 9, 2019Updated 6 years ago
- Badly written scripts for making cryoEM easier☆13Dec 15, 2020Updated 5 years ago
- A software for membrane signal subtraction to facilitate high-resolution cryo-EM reconstruction of membrane proteins embedded in their na…☆12Sep 4, 2025Updated 5 months ago
- New program to follow Relion projects in a browser!☆47Jan 5, 2026Updated last month
- ☆17Sep 20, 2022Updated 3 years ago
- PyTom software for cryo-tomogram processing☆44Jan 5, 2026Updated last month
- Public release of Ptolemy package for automated targeting of Cryo-EM grids☆18Mar 9, 2025Updated 11 months ago
- Python library that enables scripting access to CryoSPARC, a cryo-EM software package.☆45Feb 13, 2026Updated 2 weeks ago
- Cryo-EM micrograph segmentation through deep learning☆22Oct 10, 2025Updated 4 months ago
- A set of MATLAB wrapper scripts to help with pre-processing of tomography data.☆20Jan 23, 2026Updated last month
- Python scripts for easy RELION STAR file manipulation.☆24Jan 21, 2026Updated last month
- ☆23Nov 15, 2025Updated 3 months ago
- The Swiss Army Knife for Editing Relion .STAR Files☆20Jul 1, 2024Updated last year
- Automatic atomic model building program for cryo-EM maps☆161Jan 9, 2026Updated last month
- Scripts and Tools for Electron Microscopy Image Analysis.☆11Nov 25, 2025Updated 3 months ago
- Amortized inference for ab initio heterogeneous cryo-EM reconstruction☆41Apr 11, 2023Updated 2 years ago
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆31Jul 17, 2025Updated 7 months ago
- 3D-CTF correction for cryo-electron tomography☆28Nov 8, 2018Updated 7 years ago
- Tools for user-free preprocessing of cryo-EM datasets☆27Nov 22, 2022Updated 3 years ago
- GPU-accelerated template matching for cryo-ET☆51Updated this week
- ☆36Jun 22, 2023Updated 2 years ago