HuXiaoling / awesome-topology-driven-image-analysisView external linksLinks
awesome-topology-driven-deep-image-analysis
☆49Oct 3, 2025Updated 4 months ago
Alternatives and similar repositories for awesome-topology-driven-image-analysis
Users that are interested in awesome-topology-driven-image-analysis are comparing it to the libraries listed below
Sorting:
- This repository contains the implementation for our work "Learning Topological Interactions for Multi-Class Medical Image Segmentation", …☆84Feb 19, 2024Updated last year
- Code for MICCAI 2023 paper: Robust Segmentation via Topology Violation Detection and Feature Synthesis☆28Oct 9, 2025Updated 4 months ago
- Multiclass generalization for BettiMatching loss (and other topology-aware) loss functions for image segmentation.☆13Jul 29, 2024Updated last year
- Package to compute the evaluation metrics for MICCAI TopCoW2024 challenge☆16Sep 24, 2024Updated last year
- ☆59Apr 23, 2025Updated 9 months ago
- The official implementation of "Semi-supervised Segmentation of Histopathology Images with Noise-Aware Topological Consistency".☆13Jul 16, 2024Updated last year
- Automatic differentiation through persistence diagrams with PyTorch☆18May 28, 2024Updated last year
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.☆30Jul 19, 2021Updated 4 years ago
- [MedIA‘25] Efficient anatomical labeling of pulmonary tree structures via deep point-graph representation-based implicit fields☆45Nov 29, 2024Updated last year
- DMT codes for the ICLR 2021 paper: Topology-Aware Segmentation Using Discrete Morse Theory☆48Sep 19, 2023Updated 2 years ago
- nnMIL: A generalizable multiple instance learning framework for computational pathology☆43Dec 2, 2025Updated 2 months ago
- Code for the NeurIPS 2019 paper: Topology-Preserving Deep Image Segmentation☆179Sep 19, 2023Updated 2 years ago
- Another implementation of topological loss☆38May 12, 2021Updated 4 years ago
- An end-to-end framework for pulmonary airway analysis☆18Jan 19, 2026Updated 3 weeks ago
- Research Paper - Automated Labelling of Coronary Vessels via Neural Network☆10Oct 12, 2020Updated 5 years ago
- Implementation of the soft 2D Frangi filter on Pytorch☆12Mar 2, 2022Updated 3 years ago
- Discrete Morse-based pipeline for neuron tracing on tracer injection and single-neuron data sets.☆13Jan 14, 2021Updated 5 years ago
- [MICCAI 2024] Centerline Boundary Dice Loss for Vascular Segmentation☆83Dec 9, 2025Updated 2 months ago
- Algorithm submission template for the TopCoW 2024 challenge on grand-challenge☆11Feb 9, 2025Updated last year
- Leonardo Citraro, Mateusz Kozinski, Pascal Fua, Towards Reliable Evaluation of Road Network Reconstructions, ECCV 2020☆11Aug 21, 2020Updated 5 years ago
- DeepBranchTracer: A Generally-Applicable Approach to Curvilinear Structure Reconstruction Using Multi-Feature Learning☆12Jul 29, 2024Updated last year
- Signal compression and reconstruction on complexes preserving topological features via Discrete Morse Theory☆14May 31, 2022Updated 3 years ago
- ☆13Feb 8, 2022Updated 4 years ago
- ☆11Jan 25, 2024Updated 2 years ago
- A software to edit, model and mesh vascular networks from centerlines.☆29Feb 28, 2024Updated last year
- ☆57Jan 2, 2024Updated 2 years ago
- Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures☆130Dec 8, 2025Updated 2 months ago
- ☆26Feb 8, 2022Updated 4 years ago
- Init with augmentation loss☆19Feb 7, 2023Updated 3 years ago
- Topological Sculpting of 3D Fine-grained Tubular Shapes☆20Nov 25, 2025Updated 2 months ago
- The PyTorch implementation of the skea-topo aware loss proposed in paper: Enhancing Boundary Segmentation for Topological Accuracy with S…☆18Sep 7, 2025Updated 5 months ago
- ☆34Jun 10, 2025Updated 8 months ago
- ☆16Dec 12, 2025Updated 2 months ago
- Fast Implementation of Generalised Geodesic Distance Transform for CPU (OpenMP) and GPU (CUDA)☆106Feb 9, 2024Updated 2 years ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Mo…☆20Jan 22, 2026Updated 3 weeks ago
- The Centerline-Cross Entropy Loss for Vessel-Like Structure Segmentation: Better Topology Consistency Without Sacrificing Accuracy. Paper…☆24Oct 7, 2024Updated last year
- A topological machine learning framework based on PyTorch☆201Updated this week
- [NeurIPS 2025] Revisiting End-to-End Learning with Slide-level Supervision in Computational Pathology☆32Oct 20, 2025Updated 3 months ago
- [IEEE JBHI, 2023] Towards Connectivity-Aware Pulmonary Airway Segmentation☆19Jan 20, 2026Updated 3 weeks ago