Exact biosequence alignment and folding on GPUs — Needleman-Wunsch, Smith-Waterman, Levenshtein, Zuker, and Sankoff with Gotoh adjustments and traceback
☆33Aug 25, 2026Updated 3 weeks ago
Alternatives and similar repositories for AffineGaps
Users that are interested in AffineGaps are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MaxEnt code for fitting simulation outcomes/statistical models to observations☆18Jun 28, 2022Updated 4 years ago
- Build Annotation package by using information from KEGG, NCBI, Ensembl☆16May 4, 2023Updated 3 years ago
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆19Sep 1, 2023Updated 3 years ago
- CLI for disabling Turbo Boost on macOS☆18Nov 6, 2022Updated 3 years ago
- Structured Generation Evals☆14Sep 25, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- implement llava using candle☆15Jun 9, 2024Updated 2 years ago
- Two implementations of ZeRO-1 optimizer sharding in JAX☆14Jun 11, 2023Updated 3 years ago
- Optimizing bit-level Jaccard Index and Population Counts for large-scale quantized Vector Search via Harley-Seal CSA and Lookup Tables☆22May 18, 2025Updated last year
- Create and destroy RAM disks easily on modern macOS - macOS 15+☆33Updated this week
- Shaded 😎 quantile plots☆12Apr 14, 2022Updated 4 years ago
- Example of using JupyterHub with JupyterLab RTC☆11Dec 17, 2021Updated 4 years ago
- CDbw Index For Cluster Validation☆10Mar 26, 2019Updated 7 years ago
- A scheduler to manage a multi tool dual arm robot while avoiding arm-to-arm collisions; considering complex side constraints; and optimiz…☆11Jul 6, 2021Updated 5 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12May 21, 2025Updated last year
- Another Molecular String Representation☆11Aug 20, 2026Updated 3 weeks ago
- AntiRef: reference clusters of human antibody sequences☆12Apr 18, 2024Updated 2 years ago
- ☆12May 12, 2019Updated 7 years ago
- ☆12Dec 12, 2024Updated last year
- BigCodeBench: Benchmarking Code Generation with Diverse Function Calls and Complex Instructions☆26Aug 8, 2024Updated 2 years ago
- Train an LLM to generate cracked Manim animations for mathematical concepts.☆23Mar 14, 2025Updated last year
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Jun 30, 2026Updated 2 months ago
- ☆13Mar 25, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- pseudobulking on an AnnData object☆37Jun 17, 2026Updated 3 months ago
- Catalyst design for the Morita−Baylis−Hillman Reaction using a graph-based genetic algorithm☆10Jul 15, 2024Updated 2 years ago
- Using embeddings compressed by Product Quantization, in Javascript☆31Jul 6, 2023Updated 3 years ago
- implementation of Franck Farris recipes to produce wallpaper patterns☆11Mar 26, 2024Updated 2 years ago
- Analysis of antibody NGS data☆13Mar 19, 2026Updated 6 months ago
- Software and test files for Recon: Reconstruction of Estimated Communities from Observed Numbers☆14Dec 16, 2025Updated 9 months ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆41Oct 13, 2021Updated 4 years ago
- This repository contains the code for all figures in the paper "General Pitfalls of Model-agnostic Interpretation Methods for Machine Lea…☆15Aug 17, 2021Updated 5 years ago
- ☆25Oct 21, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Convenience Python APIs for antibody numbering using ANARCI☆130May 19, 2025Updated last year
- Computing the gap statistics from Tibshirani et. al. for various clustering algorithms☆14Nov 10, 2025Updated 10 months ago
- Code for the Kaggle Marinexplore challenge☆17Apr 8, 2013Updated 13 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 7 months ago
- Molecular computers with interaction combinators like graph rewrite systems☆17Nov 9, 2022Updated 3 years ago
- Traits for julia iterators☆11Aug 31, 2026Updated 2 weeks ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago