nvictus / svgpath2mplView external linksLinks
SVG path parser for matplotlib
☆67Jul 17, 2022Updated 3 years ago
Alternatives and similar repositories for svgpath2mpl
Users that are interested in svgpath2mpl are comparing it to the libraries listed below
Sorting:
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Dec 18, 2022Updated 3 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.☆26Apr 8, 2019Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 4 years ago
- Rusty juv☆13Nov 7, 2024Updated last year
- ☆11Oct 31, 2022Updated 3 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 8 years ago
- A visual exploration and hypothesis testing tool for 3D genomics☆13Apr 12, 2024Updated last year
- ☆12Sep 19, 2018Updated 7 years ago
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆18Jan 21, 2025Updated last year
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆15Apr 7, 2025Updated 10 months ago
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Sep 26, 2024Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Nov 14, 2025Updated 3 months ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Feb 2, 2026Updated last week
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- An easy way to generate PDF files which could be imported into overleaf with python/matplotlib☆16May 31, 2020Updated 5 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Convert sequence IDs between ucsc/refseq/genbank☆16Aug 28, 2018Updated 7 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 2 weeks ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Dec 26, 2021Updated 4 years ago
- Efficiently keep track of changes to genomes☆38Jul 22, 2024Updated last year
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆48Nov 14, 2024Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Jan 31, 2024Updated 2 years ago
- pyranges/bioframe for polars☆18Jul 20, 2023Updated 2 years ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- ☆21Dec 26, 2025Updated last month
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- Bedfile perturbation tool☆17Sep 29, 2025Updated 4 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆116Jan 8, 2026Updated last month
- Persist is a JupyterLab extension to enable persistent interactive visualizations in JupyterLab notebooks.☆48May 2, 2025Updated 9 months ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Oct 9, 2023Updated 2 years ago