sara-nl / 2D-VQ-AE-2
2D Vector-Quantized Auto-Encoder for compression of Whole-Slide Images in Histopathology
☆16Updated 9 months ago
Alternatives and similar repositories for 2D-VQ-AE-2
Users that are interested in 2D-VQ-AE-2 are comparing it to the libraries listed below
Sorting:
- Benchmarking toolkit for patch-based histopathology image classification.☆41Updated last year
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆36Updated 4 years ago
- Exploration of the latent space of generative models on Lung-CT scans☆16Updated 2 years ago
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆62Updated 3 years ago
- This is a PyTorch implementation of the paper: "Processing Megapixel Images with Deep Attention-Sampling Models".☆41Updated last year
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets☆86Updated last year
- A deep-learning pipeline for segmentation of ambiguous microscopic images.☆60Updated last week
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Updated 2 years ago
- Predict the status of a genetic biomarker important for brain cancer treatment☆38Updated last month
- A repository to house some personal attempts to beat some state-of-the-art for medical datasets☆98Updated last year
- Code accompanying the paper Neural Image Compression for Gigapixel Histopathology Image Analysis☆50Updated last year
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆139Updated 2 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆105Updated last year
- This is the official implementation of the method ContIG, for self-supervised learning from medical imaging with genomics☆52Updated 2 years ago
- Dense Steerable Filter CNN☆75Updated 2 years ago
- An open source online platform for collaborative image labeling of almost everything☆59Updated this week
- GAN-based method to create counterfactual explanations for chest X-rays☆24Updated 2 years ago
- Constructed attention-based deep multiple instance learning model using PyTorch and trained on 624 whole slide images of digitized H&E-st…☆19Updated 3 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 4 years ago
- Hibou: Foundational Models for Pathology☆70Updated 6 months ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆15Updated 4 years ago
- Gifsplanation - Explaining neural networks with gifs!☆25Updated last year
- ☆24Updated 4 years ago
- SimTriplet: PyTorch Implementation☆27Updated 4 years ago
- ICAM: Interpretable Classification via Disentangled Representations and Feature Attribution Mapping☆53Updated 2 years ago
- Implementation of PyTorch-based multi-task pre-trained models☆33Updated 4 years ago
- A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)☆146Updated last month
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆29Updated 3 years ago
- Pretrained model for self supervised histopathology☆114Updated 2 years ago
- Official PyTorch code for U-Noise: Learnable Noise Masks for Interpretable Image Segmentation (ICIP 2021)☆41Updated 3 years ago