Alternatives and similar repositories for pySuStaIn

Users that are interested in pySuStaIn are comparing it to the libraries listed below

• Jfortin1 / neuroCombat
  Harmonization of multi-site imaging data with ComBat (Python)
  ☆149Updated 2 years ago
• rpomponio / neuroHarmonize
  Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variabl…
  ☆110Updated this week
• james-cole / brainageR
  Software for generating a brain-predicted age value, using Gaussian Processes regression, implemented in R
  ☆93Updated last year
• andy1764 / CovBat_Harmonization
  Correcting Covariance Batch Effects (CovBat): Harmonization of mean and covariance for multi-site data
  ☆26Updated 2 years ago
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆151Updated this week
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆77Updated 4 years ago
• pawij / tebm
  ☆17Updated last year
• Jfortin1 / ComBatHarmonization
  Harmonization of multi-site imaging data with ComBat
  ☆304Updated 2 years ago
• brainchart / Lifespan
  Code used in the lifespan brainchart project
  ☆81Updated 6 months ago
• ysu001 / PUP
  PET Unified Pipeline
  ☆23Updated 4 years ago
• Conxz / multiBrain
  A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
  ☆97Updated 6 months ago
• predictive-clinical-neuroscience / braincharts
  ☆39Updated 2 months ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆70Updated last year
• netneurolab / markello_ppmisnf
  Code supporting the recent preprint Markello et al., 2020
  ☆34Updated 8 months ago
• vishnubashyam / DeepBrainNet
  Convolutional Neural Network trained for age prediction using a large (n=11,729) set of MRI scans from a highly diversified cohort spanni…
  ☆55Updated 5 years ago
• rmarkello / abagen
  A toolbox for working with Allen Human Brain Atlas microarray expression data
  ☆107Updated last year
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆163Updated last month
• andy1764 / ComBatFamily
  ComBat Family of Harmonization Methods
  ☆22Updated 2 weeks ago
• ncullen93 / neuroCombat
  Harmonizing neuroimaging data across scanners and sites
  ☆35Updated 5 years ago
• isebenius / MIND
  This repository contains a Python implementation of Morphometric INverse Divergence (MIND) calculation for the estimation of structural s…
  ☆40Updated last year
• Warvito / neurocombat_sklearn
  Implementation of Combat harmonization method with scikit-learn compatible format
  ☆23Updated 5 years ago
• MICA-MNI / BrainStat
  A statistics and context decoding toolbox for neuroimaging.
  ☆109Updated 11 months ago
• ucl-pond / SuStaInMatlab
  Subtype and Stage Inference [Young+, Nature Communications 2018]
  ☆13Updated 4 years ago
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆43Updated last week
• pBFSLab / DeepPrep
  DeepPrep: An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning
  ☆99Updated last month
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆101Updated last week
• scilus / tractoflow
  TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
  ☆61Updated 11 months ago
• illdopejake / Hippocampus_AP_Axis
  Code used for Hippocampus Anterior/Posterior gene expression and neuroimaging analyses
  ☆11Updated 2 years ago
• CBICA / NiChart_Project
  Neuro Imaging Chart of AI-based Imaging Biomarkers
  ☆22Updated this week
• carpentries-incubator / SDC-BIDS-sMRI
  Structural Neuroimaging Analysis in Python
  ☆32Updated this week