Alternatives and similar repositories for pySuStaIn

Users that are interested in pySuStaIn are comparing it to the libraries listed below

• rpomponio / neuroHarmonize
  Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variabl…
  ☆115Updated this week
• Jfortin1 / neuroCombat
  Harmonization of multi-site imaging data with ComBat (Python)
  ☆160Updated 2 years ago
• james-cole / brainageR
  Software for generating a brain-predicted age value, using Gaussian Processes regression, implemented in R
  ☆102Updated 2 years ago
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆162Updated this week
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆78Updated 4 years ago
• rmarkello / abagen
  A toolbox for working with Allen Human Brain Atlas microarray expression data
  ☆112Updated last year
• andy1764 / CovBat_Harmonization
  Correcting Covariance Batch Effects (CovBat): Harmonization of mean and covariance for multi-site data
  ☆26Updated 2 years ago
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆171Updated last month
• Conxz / multiBrain
  A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
  ☆101Updated 10 months ago
• predictive-clinical-neuroscience / braincharts
  ☆40Updated 6 months ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆73Updated 2 months ago
• pawij / tebm
  ☆18Updated last year
• netneurolab / markello_ppmisnf
  Code supporting the recent preprint Markello et al., 2020
  ☆36Updated last year
• Jfortin1 / ComBatHarmonization
  Harmonization of multi-site imaging data with ComBat
  ☆316Updated 2 years ago
• Jfortin1 / MNITemplate
  MNI152 Template
  ☆51Updated 5 years ago
• brainchart / Lifespan
  Code used in the lifespan brainchart project
  ☆86Updated 10 months ago
• ysu001 / PUP
  PET Unified Pipeline
  ☆24Updated 5 years ago
• Warvito / neurocombat_sklearn
  Implementation of Combat harmonization method with scikit-learn compatible format
  ☆23Updated 6 years ago
• MICA-MNI / micapipe
  micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read…
  ☆115Updated last month
• pBFSLab / DeepPrep
  DeepPrep: An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning
  ☆107Updated 3 months ago
• vishnubashyam / DeepBrainNet
  Convolutional Neural Network trained for age prediction using a large (n=11,729) set of MRI scans from a highly diversified cohort spanni…
  ☆58Updated 5 years ago
• alegiac95 / Imaging-transcriptomics
  A package, and script, to perform imaging transcriptomics on a neuroimaging scan.
  ☆28Updated last year
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆44Updated last month
• MICA-MNI / ENIGMA
  The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface …
  ☆171Updated this week
• andy1764 / ComBatFamily
  ComBat Family of Harmonization Methods
  ☆27Updated 4 months ago
• illdopejake / Hippocampus_AP_Axis
  Code used for Hippocampus Anterior/Posterior gene expression and neuroimaging analyses
  ☆11Updated 2 years ago
• ucl-pond / SuStaInMatlab
  Subtype and Stage Inference [Young+, Nature Communications 2018]
  ☆14Updated 4 years ago
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆73Updated last month
• MICA-MNI / BrainStat
  A statistics and context decoding toolbox for neuroimaging.
  ☆116Updated last month
• carpentries-incubator / SDC-BIDS-sMRI
  Structural Neuroimaging Analysis in Python
  ☆34Updated 2 weeks ago