Alternatives and similar repositories for reference_data

Users that are interested in reference_data are comparing it to the libraries listed below

• tristanic / isolde
  Interactive molecular dynamics based model building into low-resolution crystallographic and cryo-EM maps
  ☆39Updated 4 months ago
• maccallumlab / meld
  Modeling with limited data
  ☆59Updated 5 months ago
• ExcitedStates / qfit-3.0
  qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.
  ☆45Updated this week
• tdgrant1 / denss
  Calculate electron density from a solution scattering profile
  ☆38Updated 3 weeks ago
• KULL-Centre / CALVADOS
  ☆78Updated last month
• dseeliger / pmx
  Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
  ☆66Updated 4 years ago
• maxscheurer / pycontact
  Analysis of non-covalent interactions in MD trajectories
  ☆65Updated 11 months ago
• pstansfeld / MemProtMD
  ☆45Updated 3 weeks ago
• tommyhuangthu / FASPR
  Fast, accurate, and deterministic protein side-chain packing
  ☆36Updated 9 months ago
• freesasa / freesasa-python
  FreeSASA Python Module
  ☆58Updated 4 months ago
• bowman-lab / enspara
  Modeling molecular ensembles with scalable data structures and parallel computing
  ☆37Updated last month
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆36Updated 2 weeks ago
• Eigenstate / dabble
  Membrane protein builder and parameterizer
  ☆19Updated last year
• tiwarylab / alphafold2rave
  ☆69Updated last year
• kassonlab / gmxapi
  (outdated) fork of https://gitlab.com/gromacs/gromacs
  ☆53Updated 2 years ago
• getcontacts / getcontacts
  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
  ☆133Updated 2 years ago
• paulrobustelli / Force-Fields
  Force Fields
  ☆66Updated 10 months ago
• huhlim / cg2all
  Convert coarse-grained protein structure to all-atom model
  ☆47Updated 6 months ago
• rlabduke / MolProbity
  Protein and nucleic acid validation service
  ☆90Updated last year
• harryjubb / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆83Updated 3 years ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆89Updated 5 years ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆112Updated last year
• dabrze / CheckMyBlob
  Machine learning experiments for CheckMyBlob
  ☆14Updated 7 years ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆96Updated 6 months ago
• maccallumlab / martini_openmm
  ☆58Updated 2 years ago
• biocryst / biozernike
  Protein structure descriptors and alignment based on 3D Zernike moments.
  ☆38Updated last year
• bestlab / force_fields
  Force fields in various formats
  ☆26Updated last year
• openmm / openmm-setup
  An application for configuring and running simulations with OpenMM
  ☆75Updated last month
• schrodinger / public_binding_free_energy_benchmark
  The public versio
  ☆73Updated 2 years ago
• sosnicklab / upside2-md
  ☆26Updated last week