MobleyLab / bluesLinks
Applications of nonequilibrium candidate Monte Carlo (NCMC) to ligand binding mode sampling
☆34Updated 2 months ago
Alternatives and similar repositories for blues
Users that are interested in blues are comparing it to the libraries listed below
Sorting:
- Best practice document for alchemical free energy calculations going to livecoms journal☆81Updated last week
- ☆44Updated 3 years ago
- Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards☆46Updated 4 years ago
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆31Updated 3 weeks ago
- Set up relative free energy calculations using a common scaffold☆24Updated 4 months ago
- OpenMM plugin to interface with PLUMED☆73Updated this week
- ☆23Updated 5 years ago
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆71Updated last week
- Materials from the (virtual) 2020 RDKit UGM☆52Updated 5 years ago
- Package for consistent reporting of relative free energy results☆41Updated last week
- Advanced toolkit for binding free energy calculations☆33Updated 4 months ago
- Weighted Ensemble simulation framework in Python☆59Updated this week
- A fast solver for large scale MBAR/UWHAM equations☆40Updated last year
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆55Updated last year
- Challenge details, inputs, and results for the SAMPL7 series of challenges☆48Updated 4 years ago
- Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.☆21Updated 4 years ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆65Updated last year
- Calculation of water/solvent partition coefficients with Gromacs.☆28Updated last year
- Experimental small molecule hydration free energy dataset☆30Updated 3 years ago
- In-house tools for setting up arbitrary solute-solvent mixtures for simulation in GROMACS, Amber, OpenMM or other codes☆34Updated 5 years ago
- Standalone charge assignment from Espaloma framework.☆46Updated 3 months ago
- Code and resources for the EPSRC BioSimSpace project.☆78Updated 4 months ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆34Updated 6 months ago
- An open set of tools for automating tasks relating to small molecules☆68Updated 4 years ago
- 📐 Symmetry-corrected RMSD in Python☆109Updated 3 weeks ago
- Challenge inputs, details, and results for the SAMPL6 series of challenges☆54Updated 3 years ago
- Given an RDKit molecule that does not sanitise, correct it until it does☆43Updated last year
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆74Updated 2 years ago
- Q6 Repository -- EVB, FEP and LIE simulator.☆35Updated 2 years ago