maxscheurer / pycontactLinks
Analysis of non-covalent interactions in MD trajectories
☆58Updated 5 months ago
Alternatives and similar repositories for pycontact
Users that are interested in pycontact are comparing it to the libraries listed below
Sorting:
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated last year
- A python toolkit for analysing membrane protein-lipid interactions.☆63Updated 2 years ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- ☆54Updated 2 years ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆60Updated last year
- ☆36Updated 9 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆37Updated 11 months ago
- Utilities to assist with Amber Molecular Dynamics structure preparation and MMPBSA.py energy methods☆19Updated 5 years ago
- ☆32Updated 8 months ago
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆34Updated last month
- Q6 Repository -- EVB, FEP and LIE simulator.☆31Updated last year
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆82Updated 2 months ago
- Wrapper script for preparing explicitly solvated systems for molecular dynamics simulations with Amber.☆16Updated 11 months ago
- Collection of Python scripts to setup and run simulations with OpenMM☆17Updated 5 years ago
- ☆18Updated 3 years ago
- A collections of scripts for working molecular dynamics simulations☆43Updated last year
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆44Updated 4 years ago
- Fully automated high-throughput MD pipeline☆61Updated last week
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆70Updated 5 months ago
- Analysis of contacts in molecular dynamics trajectories☆42Updated 5 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆17Updated 2 years ago
- Set up relative free energy calculations using a common scaffold☆24Updated 2 months ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆46Updated 4 years ago
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆59Updated this week
- Computational Chemistry Workflows☆53Updated 2 years ago
- ☆65Updated last year
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆39Updated last week
- ☆65Updated last year
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆32Updated last week
- ☆28Updated last month