maxscheurer / pycontactLinks
Analysis of non-covalent interactions in MD trajectories
☆57Updated 5 months ago
Alternatives and similar repositories for pycontact
Users that are interested in pycontact are comparing it to the libraries listed below
Sorting:
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆81Updated last month
- Random Acceleration Molecular Dynamics in GROMACS☆37Updated 10 months ago
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆33Updated 3 weeks ago
- ☆35Updated 8 months ago
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆44Updated 4 years ago
- Q6 Repository -- EVB, FEP and LIE simulator.☆31Updated last year
- ☆54Updated 2 years ago
- A python toolkit for analysing membrane protein-lipid interactions.☆63Updated 2 years ago
- Fully automated high-throughput MD pipeline☆60Updated 3 weeks ago
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆58Updated 2 months ago
- Computational Chemistry Workflows☆53Updated 2 years ago
- ☆18Updated 3 years ago
- Collection of Python scripts to setup and run simulations with OpenMM☆17Updated 5 years ago
- ☆31Updated 7 months ago
- Python code for generating Boresch restraints from MD simulations☆21Updated 2 years ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆34Updated last year
- Utilities to assist with Amber Molecular Dynamics structure preparation and MMPBSA.py energy methods☆20Updated 5 years ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆60Updated last year
- ☆65Updated last year
- Trusted force field files for gromacs☆50Updated 7 months ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆45Updated 4 years ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆25Updated last week
- Set up relative free energy calculations using a common scaffold☆23Updated last month
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆32Updated 5 years ago
- A python module to plot secondary structure schemes☆25Updated last year
- Codes to use funnel-metadynamics and funnel metadynamics automated protocol☆29Updated 3 years ago
- A collections of scripts for working molecular dynamics simulations☆43Updated last year
- Yasara plugins for Gromacs users☆27Updated last year
- A tool for setting up free energy simulations.☆36Updated 2 years ago