maxscheurer / pycontactLinks
Analysis of non-covalent interactions in MD trajectories
☆66Updated 11 months ago
Alternatives and similar repositories for pycontact
Users that are interested in pycontact are comparing it to the libraries listed below
Sorting:
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆89Updated 5 months ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated 2 years ago
- Q6 Repository -- EVB, FEP and LIE simulator.☆35Updated 2 years ago
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆63Updated this week
- Fully automated high-throughput MD pipeline☆86Updated this week
- Random Acceleration Molecular Dynamics in GROMACS☆41Updated last year
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆39Updated 2 years ago
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆72Updated this week
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆36Updated last week
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆63Updated last year
- A collections of scripts for working molecular dynamics simulations☆44Updated 4 months ago
- Computational Chemistry Workflows☆56Updated 3 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆18Updated 2 years ago
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆46Updated 4 years ago
- ☆65Updated 5 months ago
- Tool suite for analysing molecular dynamics trajectories using network analysis and PRS☆52Updated 6 months ago
- Collection of Python scripts to setup and run simulations with OpenMM☆17Updated 5 years ago
- PyRod - Tracing water molecules in molecular dynamics simulations☆55Updated last month
- ☆40Updated last year
- ☆28Updated 7 months ago
- ☆34Updated last year
- Trusted force field files for gromacs☆65Updated last year
- Utilities to assist with Amber Molecular Dynamics structure preparation and MMPBSA.py energy methods☆19Updated 6 years ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆66Updated 4 years ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 2 months ago
- ☆32Updated 2 years ago
- Codes to use funnel-metadynamics and funnel metadynamics automated protocol☆30Updated 4 years ago
- ☆25Updated last year
- ☆68Updated 2 years ago
- A python toolkit for analysing membrane protein-lipid interactions.☆67Updated 2 months ago