9527567 / AmberMDrunLinks
☆16Updated last year
Alternatives and similar repositories for AmberMDrun
Users that are interested in AmberMDrun are comparing it to the libraries listed below
Sorting:
- model builder for molecular dynamics simulations☆16Updated 2 years ago
- Fully automated high-throughput MD pipeline☆70Updated 3 weeks ago
- Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …☆28Updated last month
- Computational Chemistry Workflows☆55Updated 3 years ago
- Free Parametrization for Small Molecules☆36Updated 3 weeks ago
- Fully automated docking pipeline (can be run in distributed environments)☆49Updated last week
- Molecular Dynamics for Experimentalists☆63Updated this week
- Collection of Python scripts to setup and run simulations with OpenMM☆17Updated 5 years ago
- InteractionDrawer is a JavaScript library for the drawing of highly interactive 2D ligand interaction diagrams.☆22Updated last year
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆15Updated last year
- Open-source online virtual screening tools for large databases☆30Updated last year
- Weighted Ensemble Data Analysis and Plotting☆24Updated 3 months ago
- ☆18Updated 3 years ago
- A collections of scripts for working molecular dynamics simulations☆44Updated last month
- KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.☆30Updated 2 weeks ago
- Use AutoDock for Ligand-based Virtual Screening☆23Updated last year
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆45Updated 4 years ago
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆60Updated last week
- ☆10Updated 4 years ago
- ☆21Updated 9 months ago
- DSDPFlex: Flexible-Receptor Docking with GPU Acceleration☆24Updated 3 months ago
- Academic license pre-required. While FEP Plus charge you 100,000 USD per year. Here comes the FEP-Minus, it is a Schrodinger FEP Plus ide…☆22Updated last year
- ☆28Updated 4 months ago
- Analysis of non-covalent interactions in MD trajectories☆62Updated 8 months ago
- MD pharmacophores and virtual screening☆33Updated last year
- Tool to predict water molecules placement and energy in ligand binding sites☆28Updated last week
- MSMD (mixed-solvent molecular dynamics) engine and analysis tools☆19Updated 5 months ago
- ☆51Updated 4 months ago
- Cloud-based Drug Binding Structure Prediction☆38Updated 6 months ago
- This script makes a cyclic peptide or cyclic nucleotide topology file for GROMACS out of (specially prepared) linear molecule topology fi…☆14Updated 4 years ago