9527567 / AmberMDrunLinks
☆16Updated last year
Alternatives and similar repositories for AmberMDrun
Users that are interested in AmberMDrun are comparing it to the libraries listed below
Sorting:
- model builder for molecular dynamics simulations☆16Updated 2 years ago
- Fully automated high-throughput MD pipeline☆86Updated 2 weeks ago
- Computational Chemistry Workflows☆56Updated 3 years ago
- Fully automated docking pipeline (can be run in distributed environments)☆53Updated 3 weeks ago
- Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …☆28Updated 5 months ago
- Free Parametrization for Small Molecules☆50Updated 3 months ago
- Collection of Python scripts to setup and run simulations with OpenMM☆17Updated 5 years ago
- Academic license pre-required. While FEP Plus charge you 100,000 USD per year. Here comes the FEP-Minus, it is a Schrodinger FEP Plus ide…☆24Updated last year
- Use AutoDock for Ligand-based Virtual Screening☆22Updated last year
- A python script for PyMol to make protein-ligand interaction images.☆16Updated 9 months ago
- A tutorials suite for BioSimSpace.☆34Updated 3 months ago
- Cloud-based Drug Binding Structure Prediction☆46Updated 2 months ago
- Weighted Ensemble Data Analysis and Plotting☆25Updated last month
- ☆10Updated 4 years ago
- Analysis of non-covalent interactions in MD trajectories☆65Updated last year
- A collections of scripts for working molecular dynamics simulations☆45Updated 5 months ago
- ☆18Updated 4 years ago
- InteractionDrawer is a JavaScript library for the drawing of highly interactive 2D ligand interaction diagrams.☆26Updated 2 years ago
- ☆22Updated 9 months ago
- Open-source online virtual screening tools for large databases☆35Updated last month
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆64Updated last month
- Cryptic pocket prediction using AlphaFold 2☆24Updated 3 years ago
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆19Updated 3 years ago
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆16Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆46Updated 4 years ago
- The code for the QuickVina homepage.☆36Updated 3 years ago
- ☆53Updated 8 months ago
- Data set of protein-ligand complexes with reliable experimental structures and affinities☆44Updated 3 months ago
- DSDPFlex: Flexible-Receptor Docking with GPU Acceleration☆23Updated last month