☆17Jun 27, 2026Updated 4 months ago
Alternatives and similar repositories for AmberMDrun
Users that are interested in AmberMDrun are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Oct 9, 2024Updated 2 years ago
- Learning materials for the 3000788 Introduction to Computational Molecular Biology course☆24Jul 8, 2026Updated 3 months ago
- 一个用作课堂演示的简易MD引擎以及相关案例☆22Jul 31, 2026Updated 3 months ago
- Protocols and tools to run (automated) atomistic simulations of enzyme-ligand systems☆21Oct 11, 2021Updated 5 years ago
- The App Store for VMD extensions.☆15Jan 14, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Protocols and tools to run (automated) atomistic simulations of enzyme-ligand systems☆15Jun 15, 2019Updated 7 years ago
- Automatic CHARMM-GUI browser interaction with Python☆21Mar 20, 2023Updated 3 years ago
- Code repository of Machine Learning for Quantum Chemistry book☆10Jun 5, 2023Updated 3 years ago
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆44Oct 21, 2026Updated 2 weeks ago
- ☆10May 31, 2021Updated 5 years ago
- galaxydock_dl for public☆11Dec 22, 2024Updated last year
- An implementation of the CSMILES conformer line input system.☆14Jul 11, 2025Updated last year
- Docking viewer plug-in for PyMOL☆11Oct 7, 2024Updated 2 years ago
- A repository containing the build steps for the ccpbiosim workshop on Clustering.☆11Oct 27, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Parallelizable Gaussian Accelerated Molecular Dynamics☆11Mar 20, 2026Updated 7 months ago
- prepare AMBER files for MD simulations from a pdb file☆13Jul 6, 2025Updated last year
- The files used for the introductory python for chemistry worshop☆10Sep 23, 2023Updated 3 years ago
- A script able to extract ligands from pdb structure(s) and remove them from the original structure. The ligands are identified according …☆15Jul 13, 2022Updated 4 years ago
- A tutorial for Streamlined Alchemical Free Energy Perturbations with NAMD☆17Apr 3, 2026Updated 7 months ago
- Tutorials on doing AMBER based Metadynamics and Gaussian Accelerated MD (GaMD)☆13Dec 1, 2025Updated 11 months ago
- A Web Platform for molecular dynamics automation☆43Oct 18, 2026Updated 2 weeks ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆77Jun 30, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- MMTSB Tool Set☆33Jan 26, 2026Updated 9 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- ☆10Feb 25, 2021Updated 5 years ago
- A CDK-based library for generating Scaffold Trees and Scaffold Networks☆13Oct 26, 2023Updated 3 years ago
- Adaptive string method implementation in AmberTools23 and Amber22☆16Jan 7, 2025Updated last year
- model builder for molecular dynamics simulations☆16Feb 16, 2023Updated 3 years ago
- ☆13Nov 15, 2020Updated 5 years ago
- CADD/AIDD教学网☆18Oct 24, 2026Updated last week
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆15Jun 23, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14May 15, 2024Updated 2 years ago
- ☆21Apr 26, 2026Updated 6 months ago
- Biobb_amber is a BioBB category for AMBER MD package.☆15Oct 6, 2026Updated 3 weeks ago
- An accurate and universal protein-small molecule batch docking solution using Autodock Vina☆16Oct 19, 2026Updated 2 weeks ago
- NAMD's psfgen + Python improvements☆17Sep 1, 2024Updated 2 years ago
- Some demos using Nvidia RAPIDS for Cheminformatics☆14Aug 17, 2020Updated 6 years ago
- AbLang: A language model for antibodies☆17Sep 22, 2023Updated 3 years ago