msGenDev / bioinformatics_algorithmsLinks
Python code covering some of the algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, finding regulatory motifs, analyzing genome rearrangements, identifying proteins, and many other topics.
☆12Updated 11 years ago
Alternatives and similar repositories for bioinformatics_algorithms
Users that are interested in bioinformatics_algorithms are comparing it to the libraries listed below
Sorting:
- Solutions to Programming Assignments for Bioinformatics Algorithms (Part 1) on Coursera.org☆29Updated 12 years ago
- Repository for code of the book "Bioinformatics Algorithms" by Miguel Rocha and Pedro Ferreira. Editor: Elsevier☆66Updated 7 years ago
- My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; …☆96Updated 7 years ago
- Highly adaptable common interface for proteomics search and de novo engines☆46Updated 5 months ago
- Bioinformatics Algorithms on Rosalind☆27Updated 6 years ago
- Daily analyses of genomic SARS-CoV-2 data☆14Updated 3 years ago
- Utilities for downloading and managing protein FASTA files.☆14Updated last year
- Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data e…☆44Updated last year
- Biopython Jupyter Notebook tutorial to characterize a small genome☆100Updated 5 years ago
- Explore biomolecular pathways in Reactome from the command-line or a Python script☆25Updated last year
- An Introduction to Applied Bioinformatics, 2nd Edition☆142Updated 2 years ago
- Python Implementation of Codon Adaption Index☆37Updated 3 years ago
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆111Updated 4 months ago
- Python Programming for Biologists☆145Updated this week
- Notebooks to introduce biopython☆141Updated 5 years ago
- Code repository for the book "Python for the Life Sciences" by Lancaster & Webster☆29Updated 5 years ago
- Code inspired by Bioinformatics Algorithms: an Active Learning Approach.☆126Updated 4 months ago
- Materials for a workshop introducing machine learning to biologists☆24Updated 10 months ago
- A python implementation of the Statistical Coupling Analysis (SCA)☆25Updated 6 years ago
- Galaxy Tool Shed repositories maintained and developed by the GalaxyP community☆35Updated 2 weeks ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 9 years ago
- Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)☆14Updated 8 months ago
- Programming for Biology 2019☆40Updated 3 years ago
- CoV-Seq: COVID-19 Genomic Sequence Database and Visualization☆15Updated 5 years ago
- Machine Learning in Medical Bioinformatics☆25Updated 9 months ago
- Galaxy Tool wrappers☆122Updated this week
- A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)☆26Updated 4 years ago
- Genomic data science specialization☆82Updated 10 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- De novo peptide sequencing for DDA and DIA by deep learning☆40Updated 5 years ago