msGenDev / bioinformatics_algorithms
Python code covering some of the algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, finding regulatory motifs, analyzing genome rearrangements, identifying proteins, and many other topics.
☆12Updated 10 years ago
Alternatives and similar repositories for bioinformatics_algorithms:
Users that are interested in bioinformatics_algorithms are comparing it to the libraries listed below
- Solutions to Programming Assignments for Bioinformatics Algorithms (Part 1) on Coursera.org☆30Updated 10 years ago
- ☆68Updated 4 years ago
- Python and C++ solutions for select algorithm problems from "Bioinformatics Algorithms: An Active Learning Approach" by Phillip Compeau a…☆8Updated 9 years ago
- Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data e…☆44Updated 7 months ago
- A collection of random and not so random online learning materials for biology, computation, and bioinformatics☆24Updated 7 years ago
- Python Programming for Biologists☆126Updated 2 months ago
- Machine Learning in Medical Bioinformatics☆21Updated 9 months ago
- Coursera MOOC Algorithms for DNA Sequencing by Ben Langmead, PhD, Jacob Pritt☆13Updated 9 years ago
- Utilities for downloading and managing protein FASTA files.☆13Updated 9 months ago
- GitHub for the SIB courses NGS - Genome variant analysis☆25Updated last month
- Sphinx documentation source for a computational genomics tutorial.☆33Updated 4 years ago
- Simple visualisation tool for sequences' similarity in bioinformatics☆13Updated 6 years ago
- Programming for Biology 2019☆38Updated 2 years ago
- ☆21Updated 6 years ago
- ☆63Updated last week
- DNA sequencing analysis notes from Ming Tang☆142Updated last year
- Pandas-based Data Handler for VCF, BED, and SAM Files☆32Updated 3 years ago
- Explore biomolecular pathways in Reactome from the command-line or a Python script☆22Updated 3 months ago
- Scripts, utilities and programs for genomic bioinformatics.☆81Updated last week
- Lu Lab @ Tsinghua University☆17Updated last year
- Collection of scripts for bacterial genomics☆44Updated 5 years ago
- A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessib…☆39Updated this week
- ☆31Updated last year
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆102Updated 2 years ago
- Bioinformatics Algorithms on Rosalind☆27Updated 5 years ago
- My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; …☆86Updated 6 years ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆28Updated this week
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆28Updated 4 years ago
- Genomic data science specialization☆76Updated 9 years ago
- Code repository for the book "Python for the Life Sciences" by Lancaster & Webster☆28Updated 4 years ago