msGenDev / bioinformatics_algorithmsLinks
Python code covering some of the algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, finding regulatory motifs, analyzing genome rearrangements, identifying proteins, and many other topics.
☆12Updated 11 years ago
Alternatives and similar repositories for bioinformatics_algorithms
Users that are interested in bioinformatics_algorithms are comparing it to the libraries listed below
Sorting:
- Solutions to Programming Assignments for Bioinformatics Algorithms (Part 1) on Coursera.org☆30Updated 11 years ago
- Repository for code of the book "Bioinformatics Algorithms" by Miguel Rocha and Pedro Ferreira. Editor: Elsevier☆66Updated 7 years ago
- Bioinformatics Algorithms on Rosalind☆27Updated 6 years ago
- My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; …☆97Updated 7 years ago
- Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)☆14Updated 6 months ago
- Code repository for the book "Python for the Life Sciences" by Lancaster & Webster☆29Updated 5 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆31Updated 4 months ago
- Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data e…☆43Updated last year
- Explore biomolecular pathways in Reactome from the command-line or a Python script☆24Updated last year
- Daily analyses of genomic SARS-CoV-2 data☆14Updated 3 years ago
- Notebooks to introduce biopython☆140Updated 4 years ago
- Python short course for graduates in biology and biochemistry☆17Updated 4 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- A collection of random and not so random online learning materials for biology, computation, and bioinformatics☆24Updated 8 years ago
- ☆80Updated this week
- Code inspired by Bioinformatics Algorithms: an Active Learning Approach.☆124Updated last month
- Simple image quantification software. Currently implemented for SDS-PAGE gels, western blots, and yeast spotting assays.☆17Updated 4 years ago
- An Introduction to Applied Bioinformatics, 2nd Edition☆141Updated 2 years ago
- Biopython Jupyter Notebook tutorial to characterize a small genome☆100Updated 5 years ago
- A biotechnologist's guide to evaluating machine learning algorithms, with practical Python examples☆21Updated 9 months ago
- A python implementation of the Statistical Coupling Analysis (SCA)☆25Updated 6 years ago
- De novo peptide sequencing for DDA and DIA by deep learning☆39Updated 4 years ago
- Utilities for downloading and managing protein FASTA files.☆14Updated last year
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Updated 6 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Galaxy Tool wrappers☆123Updated last week
- A platform to do RNA science☆27Updated 4 years ago
- Materials for a workshop introducing machine learning to biologists☆24Updated 8 months ago
- Python Programming for Biologists☆140Updated last month
- Programming for Biology 2019☆40Updated 3 years ago