msGenDev / bioinformatics_algorithms
Python code covering some of the algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, finding regulatory motifs, analyzing genome rearrangements, identifying proteins, and many other topics.
☆12Updated 10 years ago
Related projects ⓘ
Alternatives and complementary repositories for bioinformatics_algorithms
- Solutions to Programming Assignments for Bioinformatics Algorithms (Part 1) on Coursera.org☆30Updated 10 years ago
- Code repository for the book "Python for the Life Sciences" by Lancaster & Webster☆27Updated 4 years ago
- ☆25Updated 3 years ago
- Repository for code of the book "Bioinformatics Algorithms" by Miguel Rocha and Pedro Ferreira. Editor: Elsevier☆57Updated 6 years ago
- ☆63Updated last week
- Python Programming for Biologists☆124Updated last month
- Utilities for downloading and managing protein FASTA files.☆13Updated 8 months ago
- De novo peptide sequencing for DDA and DIA by deep learning☆30Updated 3 years ago
- ☆10Updated 4 years ago
- A collection of random and not so random online learning materials for biology, computation, and bioinformatics☆23Updated 7 years ago
- Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data e…☆43Updated 5 months ago
- 12 days of Biopython is a collection of 12 videos explaining in details how to work with Biopython, a bioinformatics tool using a real li…☆52Updated last year
- Coursera MOOC Algorithms for DNA Sequencing by Ben Langmead, PhD, Jacob Pritt☆13Updated 9 years ago
- Explore biomolecular pathways in Reactome from the command-line or a Python script☆22Updated last month
- GSE analysis for microarray data, for the tutorial as shown in https://www.youtube.com/watch?v=JQ24T9fpXvg&t=947s☆16Updated 3 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆42Updated this week
- DNA sequencing analysis notes from Ming Tang☆142Updated last year
- ☆28Updated last year
- My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; …☆83Updated 6 years ago
- CRT outreach program to assist life scientists in learning basic data science skills.☆28Updated 3 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆29Updated 5 years ago
- A collection of available Python tools for Proteomics analysis☆48Updated 5 years ago
- Python package and command line tool for epitope prediction☆49Updated 3 months ago
- projects using galaxy, python, linux command line to analyze sequencing data☆54Updated 4 years ago
- "Every single cell in the human body replaces itself over a period of seven years. That means there's not even the smallest part of you n…☆18Updated 5 years ago
- Practical, reusable scripts for bioinformatics☆97Updated 5 years ago
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆102Updated 2 years ago
- Repository for all labs for STAT115 for 2020☆48Updated 4 years ago
- ☆68Updated 3 years ago
- Python interface to running command-line and web-based MHC binding predictors☆89Updated last month