mktranstrum / MBAM
Code for the Manifold Boundary Approximation Method
☆14Updated 2 years ago
Alternatives and similar repositories for MBAM:
Users that are interested in MBAM are comparing it to the libraries listed below
- A modern genomics framework for julia☆71Updated 4 years ago
- Modeling toolkit for biochemical simulation☆74Updated last month
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated last week
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆40Updated 2 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆17Updated last week
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆62Updated last year
- Software tool for metabolic modelling in Systems Biology☆10Updated 4 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆20Updated 3 weeks ago
- Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute re…☆45Updated last week
- Implementation of advanced Sequential Monte Carlo and particle MCMC algorithms☆56Updated last week
- Plotting and interface tools for biology.☆60Updated last week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Updated 2 weeks ago
- learning state-space targets in dynamical systems☆27Updated 9 months ago
- Entropy, mutual information and higher order measures from information theory, with various estimators and discretisation methods.☆67Updated 2 years ago
- Finite State Projection algorithms for chemical reaction networks☆19Updated 4 months ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆26Updated last year
- Exponential families for JAX☆63Updated this week
- A Julia package to read, write and manipulate macromolecular structures☆100Updated this week
- Approximate Bayesian Computation (ABC) algorithms for likelihood free inference in julia☆53Updated 5 months ago
- Automated dynamical systems inference☆38Updated last year
- Julia interface to ViennaRNA for RNA structure prediction and analysis☆22Updated 10 months ago
- Tutorial Notebooks of BioJulia☆35Updated last week
- ☆56Updated 2 years ago
- A package to represent high-order relationships between objects of any type☆34Updated last year
- Stochastic Gillespie-type simulations using Julia☆63Updated 7 months ago
- Estimators for probabilities, entropies, and other complexity measures derived from data in the context of nonlinear dynamics and complex…☆65Updated 3 months ago
- Advanced Multilanguage Interface to CVODES and IDAS☆114Updated this week
- Sequence alignment tools☆62Updated 7 months ago
- FM-index for full-text search☆20Updated 3 years ago