BioCoder: A Benchmark for Bioinformatics Code Generation with Large Language Models https://arxiv.org/abs/2308.16458
☆57Jul 31, 2025Updated 7 months ago
Alternatives and similar repositories for BioCoder
Users that are interested in BioCoder are comparing it to the libraries listed below
Sorting:
- A Unified Language Model to Integrate Biomedical Text with 2D and 3D Molecular Representations https://academic.oup.com/bioinformatics/ar…☆25Jul 19, 2024Updated last year
- Replication package for ISSTA2023 paper - Towards Efficient Fine-tuning of Pre-trained Code Models: An Experimental Study and Beyond☆23Apr 9, 2023Updated 2 years ago
- JEMMA: An Extensible Java dataset for Many ML4Code Applications☆19Dec 12, 2022Updated 3 years ago
- An experiment to see if chatgpt can improve the output of the stanford alpaca dataset☆12Mar 29, 2023Updated 2 years ago
- ☆12Aug 9, 2023Updated 2 years ago
- PyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference☆11May 29, 2024Updated last year
- App for serotonergic targets☆12Jan 8, 2026Updated 2 months ago
- Contrastive learning and pre-trained encoder (CLAPE) for protein-small molecules binding (SMB) sites prediction☆19Aug 22, 2024Updated last year
- [NAACL 2024] Struc-Bench: Are Large Language Models Good at Generating Complex Structured Tabular Data? https://aclanthology.org/2024.naa…☆55Jul 31, 2025Updated 7 months ago
- Source code of Venus-MAXWELL: Efficient Learning of Protein-Mutation Stability Landscapes using Protein Language Models☆23Jun 3, 2025Updated 9 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Nov 7, 2024Updated last year
- The Code & Paper for ACL 2023 paper "Enhancing Language Representation with Constructional Information for Natural Language Understanding…☆20Jan 18, 2025Updated last year
- ☆128Aug 31, 2024Updated last year
- A script using RDKit to reproduce the BBB score reported by Gupta.☆11Jul 20, 2021Updated 4 years ago
- Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"☆16Jan 27, 2025Updated last year
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated 8 months ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated last year
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- 基于opentype.js的手写字生成程序☆13Jan 29, 2023Updated 3 years ago
- Learning to Recommend Method Names with Global Context☆13Jan 17, 2022Updated 4 years ago
- ☆13Jun 9, 2021Updated 4 years ago
- DialCoT Meets PPO: Decomposing and Exploring Reasoning Paths in Smaller Language Models☆13Nov 2, 2023Updated 2 years ago
- Code and dataset for EMNLP 2022 Findings paper "Benchmarking Language Models for Code Syntax Understanding"☆16Oct 24, 2022Updated 3 years ago
- ☆21Oct 2, 2024Updated last year
- Legible, Scalable, Reproducible Foundation Models with Named Tensors and Jax☆16Jun 16, 2024Updated last year
- ☆113Jul 17, 2024Updated last year
- ☆16Jan 28, 2026Updated last month
- Datasets is a Java library for conveniently working with machine learning datasets.☆21Jun 19, 2018Updated 7 years ago
- An RNA pipeline built on top of ADAM. Apache 2 licensed.☆19Jan 19, 2018Updated 8 years ago
- [TMLR 2024] Official implementation of "Sight Beyond Text: Multi-Modal Training Enhances LLMs in Truthfulness and Ethics"☆20Sep 15, 2023Updated 2 years ago
- Hugging Face and Pyserini interoperability☆19May 18, 2023Updated 2 years ago
- ☆22Aug 17, 2025Updated 7 months ago
- Blood–Brain Barrier Penetration Prediction Enhanced by Uncertainty Estimation☆12Feb 24, 2022Updated 4 years ago
- Web app for high throughput cell proliferation data☆13Updated this week
- Histidine Protonation State Optimizer for setting up MD simulations based on semi-empirical QM resonance☆20Mar 6, 2026Updated 2 weeks ago
- ☆50Aug 13, 2025Updated 7 months ago
- A fast sampling and analysis tool for biomolecules☆16Jan 20, 2025Updated last year
- CAT-probing: A Metric-based Approach to Interpret How Pre-trained Models for Programming Language Attend Code Structure, EMNLP 2022☆13Dec 10, 2022Updated 3 years ago
- [NeurIPS'24] Free Lunch in Pathology Foundation Model: Task-specific Model Adaptation with Concept-Guided Feature Enhancement - NeurIPS 2…☆15Nov 19, 2024Updated last year