gersteinlab / BioCoderLinks
BioCoder: A Benchmark for Bioinformatics Code Generation with Large Language Models https://arxiv.org/abs/2308.16458
☆51Updated 2 months ago
Alternatives and similar repositories for BioCoder
Users that are interested in BioCoder are comparing it to the libraries listed below
Sorting:
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆52Updated 4 months ago
- Official implementation for the paper "Toward Scientific Reasoning in LLMs: Training from Expert Discussions via Reinforcement Learning"☆51Updated 4 months ago
- ☆18Updated 7 months ago
- A Multi-Modal AI Copilot for Single-Cell Analysis with Instruction Following☆32Updated 8 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆90Updated 3 months ago
- Benchmark for LLM-based Agents in Computational Biology☆54Updated this week
- Data from BioPlanner: Automatic Evaluation of LLMs on Protocol Planning in Biology paper☆26Updated last year
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Updated last year
- Code and data for Cell-o1.☆24Updated 2 weeks ago
- A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…☆55Updated last week
- Structured Chemistry Reasoning with Large Language Models☆38Updated last year
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆49Updated last year
- LitQA Eval: A difficult set of scientific questions that require context of full-text research papers to answer☆42Updated 9 months ago
- SciKnowEval: Evaluating Multi-level Scientific Knowledge of Large Language Models☆23Updated 2 months ago
- [COLM 2024] Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluation☆14Updated last year
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆87Updated last week
- A curated list of papers on LLMs and agents for scientific research and development☆74Updated 9 months ago
- Offiical codes for DNA-GPT (ICLR 2024)☆52Updated last year
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆15Updated 6 months ago
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆26Updated last month
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆117Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆77Updated last month
- ☆42Updated last year
- ☆35Updated 2 years ago
- Large language models as universal biomedical simulators☆20Updated last year
- Official implementation of "BERTs are Generative In-Context Learners"☆32Updated 6 months ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆188Updated 2 months ago
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆208Updated last year
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆92Updated 2 months ago
- Official implementation of the ACL 2024: Scientific Inspiration Machines Optimized for Novelty☆85Updated last year