gersteinlab / BioCoderLinks
BioCoder: A Benchmark for Bioinformatics Code Generation with Large Language Models https://arxiv.org/abs/2308.16458
☆51Updated 2 months ago
Alternatives and similar repositories for BioCoder
Users that are interested in BioCoder are comparing it to the libraries listed below
Sorting:
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆52Updated 4 months ago
- Official implementation for the paper "Toward Scientific Reasoning in LLMs: Training from Expert Discussions via Reinforcement Learning"☆51Updated 4 months ago
- ☆19Updated 7 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆90Updated 3 months ago
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Updated last year
- A Multi-Modal AI Copilot for Single-Cell Analysis with Instruction Following☆31Updated 9 months ago
- Benchmark for LLM-based Agents in Computational Biology☆60Updated 3 weeks ago
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆15Updated 10 months ago
- ☆16Updated 7 months ago
- Data from BioPlanner: Automatic Evaluation of LLMs on Protocol Planning in Biology paper☆26Updated last year
- Structured Chemistry Reasoning with Large Language Models☆38Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆82Updated 2 months ago
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆88Updated last month
- Pretraining infrastructure for multi-hybrid AI model architectures☆191Updated 3 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆49Updated last year
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆17Updated 4 months ago
- Offiical codes for DNA-GPT (ICLR 2024)☆53Updated last year
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆21Updated 7 months ago
- Code and data for Cell-o1.☆25Updated last month
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆206Updated 4 months ago
- Benchmark agents on BioML tasks☆54Updated last month
- Effect of tokenization on transformers for biological sequence☆20Updated last year
- A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…☆56Updated last month
- An aviary-based data science agent based on jupyter notebooks☆39Updated 3 weeks ago
- Large language models as universal biomedical simulators☆20Updated last year
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆35Updated 2 months ago
- ☆31Updated last year
- Optimize Any User-defined Compound AI Systems☆59Updated 2 months ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆70Updated 2 months ago
- SciKnowEval: Evaluating Multi-level Scientific Knowledge of Large Language Models☆24Updated 3 months ago