gersteinlab / BioCoderLinks
BioCoder: A Benchmark for Bioinformatics Code Generation with Large Language Models https://arxiv.org/abs/2308.16458
☆51Updated last month
Alternatives and similar repositories for BioCoder
Users that are interested in BioCoder are comparing it to the libraries listed below
Sorting:
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆52Updated 3 months ago
- Official implementation for the paper "Toward Scientific Reasoning in LLMs: Training from Expert Discussions via Reinforcement Learning"☆47Updated 3 months ago
- A Multi-Modal AI Copilot for Single-Cell Analysis with Instruction Following☆31Updated 8 months ago
- ☆18Updated 6 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆87Updated 2 months ago
- ☆30Updated last year
- Benchmark for LLM-based Agents in Computational Biology☆51Updated 3 months ago
- Code and data for Cell-o1.☆23Updated 2 months ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆184Updated 2 months ago
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆83Updated 2 months ago
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆77Updated last month
- Large language models as universal biomedical simulators☆20Updated last year
- ☆38Updated 4 months ago
- A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…☆53Updated 9 months ago
- Bioformer: an efficient BERT model for biomedical text mining☆55Updated 2 years ago
- Official implementation of the ACL 2024: Scientific Inspiration Machines Optimized for Novelty☆85Updated last year
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆35Updated last month
- Data from BioPlanner: Automatic Evaluation of LLMs on Protocol Planning in Biology paper☆26Updated last year
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆207Updated last year
- A curated list of papers on LLMs and agents for scientific research and development☆72Updated 9 months ago
- Template for creating a BioCypher-driven knowledge graph☆12Updated last month
- Benchmark agents on BioML tasks☆36Updated last week
- Offiical codes for DNA-GPT (ICLR 2024)☆51Updated last year
- ☆42Updated last year
- ☆25Updated last month
- SciKnowEval: Evaluating Multi-level Scientific Knowledge of Large Language Models☆24Updated 2 months ago
- [COLM 2024] Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluation☆14Updated last year
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆205Updated 3 months ago
- Biomedical Entity Linking Benchmark☆14Updated 9 months ago