Alternatives and similar repositories for Ensemble-reweighting-using-Cryo-EM-particles:

Users that are interested in Ensemble-reweighting-using-Cryo-EM-particles are comparing it to the libraries listed below

• bio-phys / BioEM
  GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …
  ☆11Updated 2 years ago
• flatironinstitute / cryoSBI
  ☆10Updated 4 months ago
• noegroup / reform
  A simple implementation of replica exchange MD simulations for OpenMM.
  ☆23Updated 3 years ago
• KULL-Centre / CALVADOS
  ☆57Updated last week
• jhenin / Methods-for-enhanced-sampling-and-free-energy-calculations
  Enhanced sampling methods for molecular dynamics simulations
  ☆36Updated 2 years ago
• timothygrant80 / cisTEM
  ☆35Updated 2 months ago
• luigibonati / deep-learning-slow-modes
  Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"
  ☆20Updated 10 months ago
• tiwarylab / SGOOP
  Spectral Gap Optimization of Parameters
  ☆17Updated 5 years ago
• mjo22 / cryojax
  Cryo electron microscopy image simulation and analysis built on JAX.
  ☆34Updated this week
• tristanic / isolde
  Interactive molecular dynamics based model building into low-resolution crystallographic and cryo-EM maps
  ☆37Updated 2 weeks ago
• torchmd / torchmd-protein-thermodynamics
  Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics
  ☆80Updated 2 months ago
• evanseitz / ManifoldEM_Python
  ManifoldEM Python suite
  ☆16Updated 5 months ago
• weria-pezeshkian / FreeDTS
  a package to simulate fluid surfaces and biomembranes
  ☆31Updated last month
• hsidky / srv
  ☆14Updated 4 years ago
• osmart / hole2
  Source code for HOLE program.
  ☆35Updated 8 months ago
• sosnicklab / upside2-md
  ☆24Updated last week
• vuqv / cosmo
  COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM
  ☆12Updated last year
• owenvickery / cg2at
  Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)
  ☆31Updated 9 months ago
• xuhuihuang / GME_tutorials
  Tutorials for non-Markovian dynamic models (qMSM and IGME) to study protein dynamics.
  ☆23Updated 8 months ago
• Ferg-Lab / DiAMoNDBack
  DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces
  ☆19Updated last year
• coarse-graining / cgnet
  learning coarse-grained force fields
  ☆61Updated 3 years ago
• tiwarylab / RAVE
  Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)
  ☆42Updated 4 years ago
• melomcr / dynetan
  Python implementation of Dynamical Network Analysis
  ☆13Updated last month
• maccallumlab / martini_openmm
  ☆54Updated last year
• BrooksResearchGroup-UM / FastMBAR
  A fast solver for large scale MBAR/UWHAM equations
  ☆39Updated 7 months ago
• olsson-group / ito
  ☆12Updated last year
• rosalindfranklininstitute / parakeet
  Phantom generator
  ☆19Updated last month
• tiwarylab / amino
  Automatic Mutual Information Noise Omission
  ☆14Updated 6 months ago
• turonova / cryoCAT
  Contextual Analysis Tools for cryoET and subtomogram averaging
  ☆26Updated this week
• tiwarylab / alphafold2rave
  ☆68Updated 9 months ago