☆13Jun 10, 2024Updated 2 years ago
Alternatives and similar repositories for Ensemble-reweighting-using-Cryo-EM-particles
Users that are interested in Ensemble-reweighting-using-Cryo-EM-particles are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jul 27, 2026Updated last month
- GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …☆13Apr 7, 2023Updated 3 years ago
- A cryo-electron microscopy image simulation library for building data analysis in JAX☆52Updated this week
- Spectral Gap Optimization of Parameters☆18Mar 28, 2020Updated 6 years ago
- Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data☆16Aug 24, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆23Jun 6, 2024Updated 2 years ago
- ☆17Updated this week
- This is a repo used for CTBP tech talks☆13Nov 12, 2025Updated 9 months ago
- Code for Gaussian Score Matching Variational Inference☆34Feb 23, 2025Updated last year
- Phantom generator☆28Aug 8, 2025Updated last year
- Unified Free Energy Dynamics (UFED) simulations with OpenMM☆38Aug 20, 2025Updated last year
- ☆10Mar 31, 2023Updated 3 years ago
- Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset☆34Sep 18, 2025Updated 11 months ago
- 4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method☆14Sep 4, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- Comparison of principal components analysis with diffusion maps on toy data sets and a molecular simulation trajectory☆17Feb 1, 2017Updated 9 years ago
- Calculate position-dependent diffusivity functions from trajectory data (usually from molecular dynamics). The approach is described in h…☆11Mar 25, 2025Updated last year
- cryo-EM tomogram simulator☆34Sep 3, 2026Updated last week
- Web-tool for calculating and visualizing hydrophobic protrusions☆11Feb 22, 2022Updated 4 years ago
- Python solver for the Brownian, Stochastic, or Noisy Differential Equations☆12Jul 12, 2018Updated 8 years ago
- ☆45Jun 16, 2026Updated 2 months ago
- Python implementation of the umbrella integration method for potential of mean force (PMF) calculations☆17Feb 4, 2019Updated 7 years ago
- Package to perform minimum-distance distribution analyses of complex solute-solvent interactions☆25Jul 28, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- STAR file I/O in Python☆56Jun 22, 2026Updated 2 months ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆21Oct 19, 2022Updated 3 years ago
- ELViM is a method for visualizing the energy landscapes of biomolecules simulations.☆17Aug 18, 2025Updated last year
- Python implementation of Dynamical Network Analysis☆16Aug 6, 2025Updated last year
- cryo-ET workflow☆11Sep 3, 2026Updated last week
- RECOVAR is a software for reconstructing and analyzing conformations from cryo-EM and cryo-ET datasets☆39Updated this week
- ☆19Aug 17, 2026Updated 3 weeks ago
- Building a DCA Frustratometer from scratch. Ultimately we aim to compare frustrated sites according to the DCA and AWSEM Frustratometers.☆16Jan 8, 2026Updated 8 months ago
- Complementary tools for Relion tomo☆12Mar 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Unofficial implementation for the paper 'Improving Diffusion Models for Inverse Problems using Manifold Constraints'[https://arxiv.org/ab…☆12Aug 21, 2022Updated 4 years ago
- Active multi-fidelity Bayesian online changepoint detection.☆17Jun 5, 2021Updated 5 years ago
- ImgLib2 integration for ClearVolume☆12Jun 11, 2026Updated 2 months ago
- Template for creating a new python repository☆13Sep 28, 2025Updated 11 months ago
- Simulation-based inference in JAX☆54Updated this week
- Python code for generating Boresch restraints from MD simulations☆23Oct 11, 2025Updated 10 months ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆44May 3, 2020Updated 6 years ago