GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the characterization of structural models with respect to individual electron microscopy images.
☆13Apr 7, 2023Updated 3 years ago
Alternatives and similar repositories for BioEM
Users that are interested in BioEM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Jan 28, 2026Updated 9 months ago
- The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge☆12Oct 9, 2026Updated 3 weeks ago
- ☆13Jun 10, 2024Updated 2 years ago
- Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data☆15Oct 8, 2026Updated 3 weeks ago
- ☆16Jul 27, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset☆34Sep 18, 2025Updated last year
- RECOVAR is a software for reconstructing and analyzing conformations from cryo-EM and cryo-ET datasets☆40Oct 21, 2026Updated last week
- ☆45Oct 21, 2026Updated last week
- A deep manifold learning framework for 4D cryo-EM data processing for simultaneous determination of high-resolution structures and dynami…☆19Sep 12, 2022Updated 4 years ago
- Ice gradient estimation for cryoEM☆11Oct 11, 2024Updated 2 years ago
- cryo-ET workflow☆11Oct 23, 2026Updated last week
- RELION external reconstruct functionality☆12Sep 11, 2020Updated 6 years ago
- A blazing-fast and type-safe STAR file IO powered by Rust☆13Sep 22, 2026Updated last month
- Sparse Fourier Backpropagation in Cryo-EM Reconstruction☆14Dec 3, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BioEn - Bayesian Inference Of ENsembles☆25Feb 6, 2024Updated 2 years ago
- A cryo-electron microscopy image simulation library for building data analysis in JAX☆53Updated this week
- Rigid body fitting of atomic strucures in cryo-electron microscopy density maps☆24Updated this week
- automated on-the-fly tilt-series alignment☆12Jul 6, 2021Updated 5 years ago
- Simulation of cryo-EM ensemble data from atomic models of molecules exhibiting continuous motions☆15Jan 5, 2022Updated 4 years ago
- ☆16Jan 31, 2019Updated 7 years ago
- A CNN for denoising cryo-EM images☆14Dec 9, 2019Updated 6 years ago
- ☆12Apr 4, 2023Updated 3 years ago
- OPUS-SSRI☆13Dec 21, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆13Feb 20, 2024Updated 2 years ago
- ManifoldEM Python suite☆17Nov 22, 2024Updated last year
- ☆18Sep 20, 2022Updated 4 years ago
- High Throughput Electron Microscopy Image Processing Software☆41Apr 21, 2026Updated 6 months ago
- Rapidly simulate realistic cryo-EM particles☆19May 18, 2023Updated 3 years ago
- A deep learning-based framework to uniquely identify an uncorrelated, isometric and meaningful latent representation.☆19Sep 12, 2023Updated 3 years ago
- A somewhat cleaned-up version of the TOM toolbox for electron tomography☆16Nov 26, 2016Updated 9 years ago
- A curated list of awesome computational cryo-EM methods.☆151Nov 23, 2025Updated 11 months ago
- EM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. I…☆18Mar 4, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Spectral Gap Optimization of Parameters☆18Mar 28, 2020Updated 6 years ago
- MaxEnt code for fitting simulation outcomes/statistical models to observations☆18Jun 28, 2022Updated 4 years ago
- Algorithms for Single Particle Reconstruction☆67Updated this week
- Pytorch Implementation of CryoSPIN, NeurIPS 2024☆19Jan 30, 2025Updated last year
- [WIP] PyTorch & Hydra Template☆12Jul 13, 2022Updated 4 years ago
- Amortized inference for ab initio heterogeneous cryo-EM reconstruction☆43Apr 11, 2023Updated 3 years ago
- Convert coarse-grained protein structure to all-atom model☆63Jun 7, 2025Updated last year