GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the characterization of structural models with respect to individual electron microscopy images.
☆11Apr 7, 2023Updated 2 years ago
Alternatives and similar repositories for BioEM
Users that are interested in BioEM are comparing it to the libraries listed below
Sorting:
- Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset☆32Sep 18, 2025Updated 6 months ago
- ☆43Nov 21, 2025Updated 3 months ago
- ☆37Mar 5, 2026Updated 2 weeks ago
- Rigid body fitting of atomic strucures in cryo-electron microscopy density maps☆22Jan 28, 2026Updated last month
- Ice gradient estimation for cryoEM☆11Oct 11, 2024Updated last year
- structural heterogeneity analysis for cryo-ET subtomogram☆10Feb 23, 2026Updated 3 weeks ago
- RELION external reconstruct functionality☆12Sep 11, 2020Updated 5 years ago
- BioEn - Bayesian Inference Of ENsembles☆22Feb 6, 2024Updated 2 years ago
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 4 years ago
- ☆13Dec 15, 2025Updated 3 months ago
- Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data☆16Nov 5, 2025Updated 4 months ago
- Simulation of cryo-EM ensemble data from atomic models of molecules exhibiting continuous motions☆14Jan 5, 2022Updated 4 years ago
- A CNN for denoising cryo-EM images☆13Dec 9, 2019Updated 6 years ago
- OPUS-SSRI☆13Dec 21, 2022Updated 3 years ago
- ☆12Apr 4, 2023Updated 2 years ago
- Pytorch Implementation of CryoSPIN, NeurIPS 2024☆17Jan 30, 2025Updated last year
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆12Feb 20, 2024Updated 2 years ago
- From cryo-EM density map to atomic structure☆25Feb 7, 2026Updated last month
- A deep manifold learning framework for 4D cryo-EM data processing for simultaneous determination of high-resolution structures and dynami…☆18Sep 12, 2022Updated 3 years ago
- ☆12Jun 10, 2024Updated last year
- EM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. I…☆17Mar 4, 2025Updated last year
- A deep learning-based framework to uniquely identify an uncorrelated, isometric and meaningful latent representation.☆20Sep 12, 2023Updated 2 years ago
- A cryo-electron microscopy image simulation library for building data analysis in JAX☆44Mar 3, 2026Updated 2 weeks ago
- ManifoldEM Python suite☆17Nov 22, 2024Updated last year
- A curated list of awesome computational cryo-EM methods.☆143Nov 23, 2025Updated 3 months ago
- Rapidly simulate realistic cryo-EM particles☆18May 18, 2023Updated 2 years ago
- Amortized inference for ab initio heterogeneous cryo-EM reconstruction☆42Apr 11, 2023Updated 2 years ago
- Miscellaneous scripts for processing cryo-ET data☆21Feb 25, 2025Updated last year
- ☆17Sep 20, 2022Updated 3 years ago
- Spectral Gap Optimization of Parameters☆18Mar 28, 2020Updated 5 years ago
- Diverse and challenging datasets for the heterogeneity problem in cryo-EM☆40Jan 14, 2026Updated 2 months ago
- A somewhat cleaned-up version of the TOM toolbox for electron tomography☆16Nov 26, 2016Updated 9 years ago
- deep structural disentanglement☆42Feb 25, 2026Updated 3 weeks ago
- A CTF Simulation Web App☆13Aug 6, 2025Updated 7 months ago
- ☆12Jul 31, 2024Updated last year
- [WIP] PyTorch & Hydra Template☆12Jul 13, 2022Updated 3 years ago
- MaxEnt code for fitting simulation outcomes/statistical models to observations☆16Jun 28, 2022Updated 3 years ago
- Neural multiclass ab initio reconstruction for cryo-EM.☆13Dec 5, 2024Updated last year
- A new repository (with deleted history) in preparation for release 3.0 of SIMPLE☆25Updated this week