Measure the orientation of fibers and structures in 2D images — ImageJ/Fiji plugins based on the gradient structure tensor, with docs, theory, assessment, and test images.
☆32Aug 11, 2026Updated this week
Alternatives and similar repositories for OrientationJ
Users that are interested in OrientationJ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Apr 20, 2026Updated 3 months ago
- Fast median filter for circle-valued data, for example signals or images describing phase or orientation☆16May 11, 2026Updated 3 months ago
- Total Variation Regularization of Pose Streams☆12Dec 8, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The Recursive Zonal Equal Area (EQ) Sphere Partitioning Toolbox is a suite of Matlab functions for partitioning and point distribution on…☆18Apr 16, 2026Updated 3 months ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆40Jul 2, 2026Updated last month
- ☆22May 12, 2021Updated 5 years ago
- Quick preview of HDF5 files on the command line☆13Oct 5, 2018Updated 7 years ago
- Python and C++ library to process both experimental and simulation data of colloidal particles.☆15Sep 2, 2021Updated 4 years ago
- AICS ML Segmentation (One-Way) Mirror☆28May 2, 2021Updated 5 years ago
- Stock analysis framework using pandas and ta-lib☆15Mar 3, 2018Updated 8 years ago
- A software suite for automatic treatment, analysis and plotting of large and multivariable datasets of bioNMR peaklists.☆12Apr 17, 2020Updated 6 years ago
- A Python interface for NIH Reporter APIs☆12Feb 4, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A picture processing algorithm development kit☆11Mar 12, 2025Updated last year
- A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)☆20Jul 16, 2019Updated 7 years ago
- Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quant…☆37Aug 6, 2026Updated last week
- A nifty library for graph based image segmentation.☆48May 3, 2025Updated last year
- Extract live market data from Yahoo Finance, Nasdaq.com and Bigcharts.marketwatch.com☆14Jul 1, 2025Updated last year
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆12Jul 25, 2024Updated 2 years ago
- Slicer extensions for computing feature maps of N-Dimensional images using well-known texture analysis methods.☆11Mar 24, 2025Updated last year
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 6 months ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Apr 4, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.☆19Jun 14, 2022Updated 4 years ago
- Leica Image Format (LIF) file reader for Python☆39Mar 26, 2026Updated 4 months ago
- Code for fitting neural spike trains with nonparametric hidden Markov and semi-Markov models built upon mattjj's PyHSMM framework.☆16Aug 10, 2018Updated 8 years ago
- Physics Informed Neural Networks (PINNs) code to solve the 3D Poisson-Boltzmann equation.☆17Mar 31, 2025Updated last year
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated last year
- ☆10Jan 17, 2023Updated 3 years ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Feb 5, 2026Updated 6 months ago
- MESCnn: MESC classification by neural network☆10Jan 8, 2024Updated 2 years ago
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- AICS Segmentation (One-Way) Mirror☆45Dec 16, 2020Updated 5 years ago
- ImageJ/Fiji plugin to analyze 2D and 3D skeleton images☆28Jun 14, 2022Updated 4 years ago
- A modular tool for collecting and visualizing data, especially suited for low temperature physics labs.☆16Apr 20, 2026Updated 3 months ago
- Toolbox for generating spatially uniform sampling patterns and decompositions of a unit sphere☆36Mar 4, 2021Updated 5 years ago
- Predict the knee adduction moment using motion capture marker positions.☆11Jan 24, 2022Updated 4 years ago
- Color Deconvolution for quantification of histological staining☆12Dec 18, 2018Updated 7 years ago
- PLEASE: The Python Low-energy Electron Analysis SuitE - Enabling rapid analysis and visualization of LEEM and LEED Data.☆17Jun 30, 2021Updated 5 years ago