Alternatives and similar repositories for OrientationJ:

Users that are interested in OrientationJ are comparing it to the libraries listed below

• morphometrics / morphometrics
  ☆20Updated last year
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆21Updated 4 years ago
• nedelec / cytosim-2017
  This is an older version of cytosim, a cytoskeleton simulation engine
  ☆27Updated 3 years ago
• royerlab / daxi
  High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy
  ☆27Updated 5 months ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 5 months ago
• imglib / imglyb
  Connecting Java/ImgLib2 + Python/NumPy
  ☆30Updated 3 weeks ago
• vianamp / MitoGraph
  Software for Quantifying Mitochondrial Content in Live Cells
  ☆25Updated 7 months ago
• python-microscopy / python-microscopy
  The python-microscopy environment - an open-source package for light microscopy
  ☆86Updated 2 weeks ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆61Updated 2 weeks ago
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 3 years ago
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆58Updated last year
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆28Updated 3 weeks ago
• clij / clij
  CLIJ is deprecated. Visit CLIJ2
  ☆56Updated 3 years ago
• biovoxxel / bv3dbox
  The known BioVoxxel Toolbox functions now improved for 2D and 3D images
  ☆15Updated 3 weeks ago
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆20Updated 4 months ago
• PreibischLab / multiview-reconstruction
  Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
  ☆24Updated last week
• ClearVolume / clearvolume
  ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …
  ☆44Updated this week
• miura / ij_textbook2
  CMCI textbook 2, for ImageJ macro course
  ☆18Updated 7 years ago
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆16Updated this week
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆24Updated 4 years ago
• pylattice / pyLattice
  A python library for advanced lattice light-sheet image analysis
  ☆21Updated 4 years ago
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆69Updated last week
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆54Updated this week
• abcucberkeley / PetaKit5D
  ☆38Updated 2 months ago
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆21Updated last month
• AndrewGYork / high_na_single_objective_lightsheet
  Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…
  ☆22Updated 7 months ago
• matplotlib / napari-matplotlib
  Linking napari layers with Matplotlib plots
  ☆40Updated last week
• clij / clij2
  GPU-accelerated image processing for everyone
  ☆50Updated 7 months ago
• napari / napari.github.io
  website for the napari image viewer
  ☆44Updated this week