djoshea / obci
Code for real-time, low-latency processing of 2P calcium imaging data streaming from PrairieView
☆11Updated 3 years ago
Alternatives and similar repositories for obci:
Users that are interested in obci are comparing it to the libraries listed below
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆25Updated 6 years ago
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- ☆34Updated last year
- Analyze neuroscience data in the cloud☆19Updated 6 months ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆25Updated 2 years ago
- Software and hardware for control of operant conditioning behavioural experiments☆9Updated last year
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆39Updated this week
- The code for the Hidden Markov Model Generalized Linear Model used to model discrete complex behavior profiles of mice using neural activ…☆10Updated 2 years ago
- Adaptive Platform for Neuroscience Experiments☆40Updated last month
- Tools, algorithms, and frameworks for managing and analyzing neural data.☆20Updated 3 years ago
- SpikeForest -- spike sorting analysis for website☆16Updated 4 years ago
- computes intrinsic cell features from intracellular electrophysiology data☆27Updated 4 months ago
- Deconvolution of calcium imaging data☆91Updated 2 months ago
- ☆26Updated 8 months ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Updated 3 years ago
- This repository contains code used for the fly brain activity experiments☆18Updated last year
- Tutorials for learning NWB☆16Updated 2 years ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆54Updated last year
- NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files☆24Updated 3 weeks ago
- Trend Filter Denoising☆21Updated 3 years ago
- Block-wise task scheduling for large nD volumes.☆30Updated this week
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆55Updated this week
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago
- BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome☆10Updated 2 years ago
- The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underl…☆20Updated 8 years ago
- Tool to help inspect NWB files for compliance with NWB Best Practices☆19Updated this week
- NeuroMatic☆24Updated last year
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆11Updated last year
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆13Updated this week
- A modular package to control stimulation and track behaviour☆44Updated 4 months ago