Alternatives and similar repositories for ANTsDoc

Users that are interested in ANTsDoc are comparing it to the libraries listed below

• CoBrALab / MAGeTbrain
  Multiple Automatically Generated Templates brain segmentation algorithm
  ☆50Updated last year
• nmpowell / mousemorph
  Tools for MRI mouse brain morphometry
  ☆31Updated 8 years ago
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆30Updated last week
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆37Updated 7 months ago
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆112Updated 6 months ago
• daducci / COMMIT
  Linear framework to combine tractography and tissue microstructure estimation with diffusion MRI
  ☆46Updated this week
• maartenmennes / ICA-AROMA
  ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
  ☆98Updated last year
• Deep-MI / BrainPrint-legacy
  Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
  ☆20Updated 4 years ago
• andersonwinkler / PALM
  PALM: Permutation Analysis of Linear Models
  ☆75Updated 2 months ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆71Updated this week
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆42Updated 9 months ago
• ofgulban / segmentator
  3D MRI data exploration and segmentation tool.
  ☆75Updated 2 years ago
• neurolabusc / NiiStat
  NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations
  ☆32Updated 5 years ago
• raamana / visualqc
  VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
  ☆73Updated last month
• preprocessed-connectomes-project / quality-assessment-protocol
  Scripts and documentation for the PCP's protocol for assessing data quality.
  ☆41Updated 3 years ago
• scilus / tractoflow
  TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
  ☆59Updated 10 months ago
• NIC-VICOROB / SLSToolBox
  Automated white matter lesion segmentation
  ☆9Updated 8 years ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆69Updated last year
• FCP-INDI / C-PAC
  Configurable Pipeline for the Analysis of Connectomes
  ☆68Updated this week
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆77Updated 4 years ago
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• SebastianoF / bruker2nifti
  Medical image format converter: from raw Bruker ParaVision to nifti.
  ☆31Updated last year
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆160Updated this week
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆53Updated last year
• carpentries-incubator / SDC-BIDS-sMRI
  Structural Neuroimaging Analysis in Python
  ☆31Updated this week
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆99Updated last week
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆28Updated 3 weeks ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated last month
• IBT-FMI / SAMRI
  Small Animal Magnetic Resonance Imaging via Python.
  ☆43Updated last year
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆64Updated 2 years ago