A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water
☆16Feb 27, 2025Updated last year
Alternatives and similar repositories for pairwise-sequence-alignment
Users that are interested in pairwise-sequence-alignment are comparing it to the libraries listed below
Sorting:
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆106May 23, 2025Updated 9 months ago
- MGcount github repository☆14Jan 19, 2023Updated 3 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jan 26, 2025Updated last year
- Curated list of awesome datasets for various table understanding tasks☆18Sep 5, 2025Updated 6 months ago
- Tcp Server and Client Implementation with multiple client handling.☆12Jul 13, 2025Updated 7 months ago
- A tool to test web scraping rules.☆14Jul 23, 2025Updated 7 months ago
- RISmed is an R package for downloading and analyzing data from the NCBI databases☆38Feb 5, 2024Updated 2 years ago
- This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project☆10Sep 28, 2018Updated 7 years ago
- The Force, Accounted (in R)☆11Nov 12, 2017Updated 8 years ago
- Xiangyun's personal website☆11Updated this week
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 4 years ago
- General Regression Neural Networks☆11Oct 25, 2020Updated 5 years ago
- CascadER: Cross-Modal Cascading for Knowledge Graph Link Prediction (arXiv 22)☆13Jun 17, 2022Updated 3 years ago
- ☆10Jun 5, 2021Updated 4 years ago
- Code for the paper "Refining Language Model with Compositional Explanation" (NeurIPS 2021)☆12Oct 25, 2021Updated 4 years ago
- Code for accurate inference of tree topologies from multiple sequence alignments using deep learning☆10Nov 3, 2019Updated 6 years ago
- Combine vim-projectionist with vim-dirvish!☆12May 14, 2021Updated 4 years ago
- ☆11Jul 11, 2023Updated 2 years ago
- Research into creating tiny .NET executables☆14Apr 21, 2018Updated 7 years ago
- OpenOffice style files for JabRef☆12May 30, 2024Updated last year
- ☆11Jul 13, 2018Updated 7 years ago
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 6 months ago
- ☆13Updated this week
- this repository contains the dataset and the source code for the EMNLP 2019 paper "A Neural Citation Count Prediction Model based on Peer…☆10Oct 8, 2021Updated 4 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- ☆14Aug 6, 2021Updated 4 years ago
- python日报，每天分享5篇精选python好文☆10Jun 10, 2020Updated 5 years ago
- A user script to boost your productivity on GitHub☆13Nov 6, 2024Updated last year
- Google Sheets formulas that look more like code☆14Aug 3, 2017Updated 8 years ago
- R package providing date C++ library header files☆11Jan 14, 2026Updated last month
- ☆12Mar 5, 2021Updated 5 years ago
- Converts brat standoff format to JSONL format☆13Jan 29, 2022Updated 4 years ago
- ☆11Oct 23, 2025Updated 4 months ago
- ALMOND: Adaptive Latent Modeling and Optimization via Neural Networks and Langevin Diffusion☆13Nov 16, 2019Updated 6 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- Code for ACL 2022 paper "HIBRIDS: Attention with Hierarchical Biases for Structure-aware Long Document Summarization".☆13May 24, 2022Updated 3 years ago
- Script for generating the rotowire-modified dataset (Iso et al; ACL 2019)☆12Sep 19, 2021Updated 4 years ago