ashelylinluo / EGDBLinks
EGDB: A Comprehensive Multi-Omics Database for Energy Grasses and the Epigenomic Atlas of Pearl Millet
☆41Updated last year
Alternatives and similar repositories for EGDB
Users that are interested in EGDB are comparing it to the libraries listed below
Sorting:
- ColabFold protocol☆56Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- Alphafold3 using mmseqs2-gpu for sequence query☆35Updated 8 months ago
- ☆23Updated 2 years ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆97Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- A tool for protein and protein complex structure prediction.☆29Updated 7 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated last month
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- Python framework for doing ancestral sequence reconstruction☆43Updated last year
- Next generation sequence parameter library for proteins☆38Updated 3 weeks ago
- RNA Structural Covariation Above Phylogenetic Expectation☆18Updated last month
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated 2 years ago
- a collection of colabs useful for molecular biology☆32Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆102Updated last year
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆29Updated 2 weeks ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆79Updated 2 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 4 months ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆64Updated 5 years ago
- Geometry-aware protein binding site predictor☆25Updated last year
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Updated 2 years ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Updated 4 months ago
- Peptide library design☆23Updated 5 years ago
- A domain parser for Alphafold models☆46Updated 2 years ago
- Wrapper tool for ancestral sequence and indel reconstruction using IQ-TREE☆11Updated 3 months ago
- Direct coupling analysis software for protein and RNA sequences☆58Updated 6 months ago