curie-data-factory / health-data-metrics
Health Data Metrics (HDM) a Data Quality assessment Application.
☆11Updated 2 years ago
Alternatives and similar repositories for health-data-metrics:
Users that are interested in health-data-metrics are comparing it to the libraries listed below
- eds-scikit is a Python library providing tools to process and analyse OMOP data☆38Updated 2 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆76Updated last week
- Mapping the MIMIC-III database to the OMOP schema☆131Updated 11 months ago
- Backend of the Cohort360 web app @ https://github.com/aphp/Cohort360-FrontEnd and the Administration Portal @ https://github.com/aphp/Coh…☆4Updated last week
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆63Updated last month
- Python package for machine learning for healthcare using a OMOP common data model☆107Updated last year
- A web application to find patients, build cohorts and visualize health records☆45Updated this week
- ETL Tool for converting datasets to OMOP CDM☆30Updated 2 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆64Updated 3 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆167Updated last month
- FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation o…☆48Updated last year
- Course materials for OHDSI ETL tutorial☆45Updated 3 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆91Updated 8 months ago
- Open source clinical text de-identification☆122Updated 6 months ago
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆76Updated 2 weeks ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- A tool to help improve data quality standards in observational data science.☆154Updated last month
- Tools that make it easier to use FHIR® and clinical terminology within data analytics, built on Apache Spark.☆95Updated this week
- Pilot model and converter for integration of radiology data into OMOP-CDM☆22Updated 5 years ago
- Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.☆120Updated this week
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆93Updated 8 months ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆28Updated 7 years ago
- Annotator building tool for Jupyter☆21Updated last year
- EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports☆52Updated 2 weeks ago
- Oncology Working Group Repository☆56Updated last week
- A Python library to de-identify medical records with state-of-the-art NLP methods.☆124Updated last year
- A version of MIMIC-IV in FHIR☆40Updated 3 months ago
- An R package for performing various cohort diagnostics.☆42Updated last month
- Code for BEHRT: Transformer for Electronic Health Records☆108Updated last year
- A Python library for performing NLP on clinical text written in Dutch☆35Updated 3 months ago