Alternatives and similar repositories for panelPomp:

Users that are interested in panelPomp are comparing it to the libraries listed below

• akira-endo / Intro-PMCMC
  Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.
  ☆12Updated 2 years ago
• kingaa / sbied
  Simulation-based Inference for Epidemiological Dynamics
  ☆25Updated 11 months ago
• shedding-hub / shedding-hub
  Data and statistical models for biomarker shedding.
  ☆13Updated this week
• rgiordan / StanSensitivity
  Tools for automatically generating local sensitivity measures in Stan.
  ☆35Updated 4 years ago
• kingaa / pomp
  R package for statistical inference using partially observed Markov processes
  ☆114Updated last week
• rosannaclairebarnard / covidm-mtd-Omi
  Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…
  ☆11Updated 2 years ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• andy-iskauskas / hmer
  An R package for Bayes Linear emulation and history matching.
  ☆16Updated 3 weeks ago
• TheoMichelot / smoothSDE
  Fit stochastic differential equation models with time-varying parameters
  ☆15Updated 10 months ago
• kpzoo / EpiFilter
  Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…
  ☆22Updated last year
• charlesm93 / disease_transmission_workflow
  Supplementary code for paper "Bayesian workflow for disease transmission model".
  ☆27Updated 4 years ago
• cmmid / covid-age
  Analysis code and data for COVID-19 age-specific clinical fraction
  ☆22Updated 4 years ago
• nfidd / nfidd
  Course on nowcasting and forecasting of infectious disease dynamcis
  ☆16Updated this week
• mrc-ide / drjacoby
  Flexible Markov chain monte carlo via reparameterization
  ☆12Updated 8 months ago
• CDCgov / measles-model-chicago-2024
  Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…
  ☆13Updated 5 months ago
• SABS-R3-Epidemiology / epiabm
  Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.
  ☆18Updated 3 months ago
• epiforecasts / inc2prev
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Updated last year
• cdcepi / FluSight-forecasts
  FluSight Forecast Submissions
  ☆18Updated 11 months ago
• colemonnahan / gradmcmc
  Faster estimation of Bayesian models in ecology using Hamiltonian Monte Carlo
  ☆15Updated 8 years ago
• goldingn / neuts2efficacy
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
  ☆18Updated last year
• akira-endo / COVID19_clustersize
  Analysis of COVID-19 transmission using cluster size distribution
  ☆11Updated 2 years ago
• ajnafa / Bayesian-IPW
  ☆16Updated 3 years ago
• anastasiachtz / COMMAND_stan
  Contemporary statistical inference for infectious disease models using Stan
  ☆15Updated 6 years ago
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆38Updated 3 weeks ago
• rtrangucci / multi_output_gps
  ☆13Updated 7 years ago
• ryantibs / quantgen
  Tools for generalized quantile modeling
  ☆15Updated 2 years ago
• mrc-ide / individual
  R Package for individual based epidemiological models
  ☆30Updated 6 months ago
• becarioprecario / INLAMCMC_examples
  Examples on INLA within MCMC
  ☆11Updated 7 years ago
• amanda-minter / abc_R
  ☆11Updated 4 years ago
• kbubar / vaccine_prioritization
  ☆17Updated 4 years ago