Alternatives and similar repositories for recombyne

Users that are interested in recombyne are comparing it to the libraries listed below

• elliothershberg / interactive-mutation-browser
  In silico protein surgery using ESM.
  ☆18Updated last year
• nebiolabs / plate-map
  A flexible tool for defining the contents of 96 well plates.
  ☆50Updated last year
• octantbio / octopus
  A scalable cloning system
  ☆25Updated 2 years ago
• Edinburgh-Genome-Foundry / Plateo
  🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
  ☆45Updated 4 months ago
• swansonk14 / language_models_biology
  ☆18Updated last year
• Lattice-Automation / icor-codon-optimization
  RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8
  ☆69Updated 2 years ago
• octantbio / SwabSeq
  ☆23Updated 5 years ago
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆36Updated 5 months ago
• Edinburgh-Genome-Foundry / Minotaor
  An amino acid sequence annotator
  ☆16Updated 5 months ago
• sphinxbio / platechain
  LLMs for microplate data
  ☆43Updated last year
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 3 years ago
• Lattice-Automation / repp
  repository-based plasmid design
  ☆29Updated 2 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆25Updated 3 months ago
• rsinghlab / pyaging
  A Python-based compendium of GPU-optimized aging clocks.
  ☆107Updated 3 weeks ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆20Updated last month
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated 3 weeks ago
• theislab / vevo_Tahoe_100m_analysis
  ☆30Updated 5 months ago
• ArcInstitute / SRAgent
  LLM agents for working with the SRA and associated bioinformatics databases.
  ☆125Updated last week
• Edinburgh-Genome-Foundry / GoldenHinges
  Short overhangs design for DNA assembly
  ☆15Updated 3 years ago
• ginkgobioworks / sars-cov-2-synthesis
  Ginkgo SARS-CoV-2 synthesis efforts: overviews and data
  ☆13Updated 5 years ago
• DanHanh / scLinear
  ☆19Updated last year
• laminlabs / lamindb
  A data framework for biology. Makes your data queryable, traceable, reproducible, and FAIR. One API: lakehouse, lineage, feature store, o…
  ☆198Updated this week
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 4 years ago
• de-Boer-Lab / hashFrag
  A command-line tool to mitigate homology-based data leakage in sequence-to-expression models
  ☆16Updated 3 months ago
• nfusi / qvalue
  Converts p-values in q-values, see (Storey and Tibshirani, 2003)
  ☆29Updated 8 years ago
• helicalAI / helical
  A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
  ☆158Updated 2 weeks ago
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 5 months ago
• benchling / clustalo-python
  A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)
  ☆25Updated 3 years ago
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 5 years ago
• jvrana / benchling-api
  A python wrapper for the benchling api
  ☆50Updated 5 years ago