ToruNiina / afmizeLinks
generate pseudo-AFM image file from structure file
☆13Updated last year
Alternatives and similar repositories for afmize
Users that are interested in afmize are comparing it to the libraries listed below
Sorting:
- C++11/Python3 library to read/write High Speed AFM data file☆13Updated 2 years ago
- 分子シミュレー ションの理論や関連するトピックをまとめたノート☆25Updated last year
- Prepare topology and coordinate file for CG models in Genesis.☆11Updated 8 months ago
- general purpose coarse-grained molecular dynamics simulation package☆33Updated 2 years ago
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆32Updated 3 months ago
- COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM☆12Updated last year
- Rigid body fitting of atomic strucures in cryo-electron microscopy density maps☆21Updated last week
- GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …☆11Updated 2 years ago
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆21Updated 2 months ago
- 分子動力学法ステップ・バイ・ステップ☆15Updated 5 years ago
- Sire Molecular Simulations Framework☆95Updated last year
- Source code for HOLE program.☆35Updated 9 months ago
- A voxel based approach for dynamic cluster analysis of molecular dynamics trajectories.☆28Updated 3 months ago
- CueMol: Molecular Visualization Framework☆16Updated 2 months ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- ☆41Updated this week
- qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.☆41Updated last week
- Coarse-grained molecular dynamics for protein physics. NOTE: this has been superseded by Upside 2: https://github.com/sosnicklab/upside2-…☆23Updated 3 years ago
- Fast PBC wrapping and unwrapping for VMD☆23Updated 6 months ago
- Robust Equilibration Detection☆22Updated last month
- A machine learned Molecular Mechanics force field with integration into GROMACS and OpenMM☆45Updated last week
- Modeling molecular ensembles with scalable data structures and parallel computing☆35Updated last week
- Interactive molecular dynamics based model building into low-resolution crystallographic and cryo-EM maps☆38Updated 3 weeks ago
- Calculate electron density from a solution scattering profile☆33Updated this week
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆23Updated 2 months ago
- ☆64Updated this week
- Modeling with limited data☆57Updated 6 months ago
- We provide a set of scripts to calculate native contacts from a MD. Native contacts are determined according to the overlap and rCSU appr…☆16Updated 11 months ago
- TS2CG: Conversion of triangulated surfaces to (coarse grain) membrane models for molecular simulation☆29Updated last month
- PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis☆19Updated 2 months ago