generate pseudo-AFM image file from structure file
☆15May 15, 2024Updated last year
Alternatives and similar repositories for afmize
Users that are interested in afmize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Prepare topology and coordinate file for CG models in Genesis.☆13Jul 3, 2025Updated 9 months ago
- C++11/Python3 library to read/write High Speed AFM data file☆14Apr 14, 2023Updated 3 years ago
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆22Mar 21, 2025Updated last year
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆12Feb 20, 2024Updated 2 years ago
- Web application for monitor EM results☆13Apr 7, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆22Oct 31, 2025Updated 5 months ago
- Atomic Force Microscopy Analysis Platform☆28Updated this week
- Software for the prediction of DEER and PRE data from conformational ensembles.☆14May 6, 2025Updated 11 months ago
- A Morton Order (Z-Order Curve) library, written in Go.☆13Mar 24, 2026Updated 3 weeks ago
- general purpose coarse-grained molecular dynamics simulation package☆35Jan 27, 2023Updated 3 years ago
- 分子シミュレーションの理論や関連するトピックをまとめたノート☆28Mar 7, 2024Updated 2 years ago
- 分子動力学法の理論と実装(集中講義ノート)☆32May 31, 2025Updated 10 months ago
- Tutorial files☆12Aug 7, 2024Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆64Apr 3, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Gravitational Lensing of Waves☆22Mar 19, 2026Updated 3 weeks ago
- ☆14Jun 4, 2024Updated last year
- Canonical (Kohn-Sham) molecular orbital calculation software for large molecules such as protein☆13Mar 26, 2025Updated last year
- Rust bindings to chemfiles☆17Mar 9, 2026Updated last month
- This is an old archived repository that we keep for our records. Please use recent GENESIS repository and do not use this one.☆11Sep 15, 2022Updated 3 years ago
- Tachyon library, written by John Stone☆14Sep 5, 2019Updated 6 years ago
- Tool to generate markdown files from lean files. This is heavily inspired by lean2md.☆25Mar 27, 2026Updated 2 weeks ago
- 4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method☆13Apr 7, 2026Updated last week
- Program to find drug-like RNA-ligand binding pockets.☆24Mar 19, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Examples and data for performing path similarity analysis (PSA).☆17Oct 23, 2015Updated 10 years ago
- 分子動力学法ステップ・バイ・ステップ☆17Oct 13, 2019Updated 6 years ago
- A Key-Value Dictionary for Fortran implemented with a hashtable and singly-linked lists.☆19Apr 17, 2018Updated 7 years ago
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆42Jan 7, 2026Updated 3 months ago
- An implementation of SEPARO, a board game, with Monte Carlo Tree Search algorithm in Rust/wasm.☆20Sep 27, 2020Updated 5 years ago
- Integration of the Fortran standard library in CMake projects☆17Sep 11, 2021Updated 4 years ago
- 3D model Editor in DirectX☆14Mar 29, 2026Updated 2 weeks ago
- A software package to identify and locate knots in polymers☆14Nov 20, 2022Updated 3 years ago
- A library for flexible and easy to use error handling in Fortran projects☆19Oct 9, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Academic paper management with Notion☆17Feb 13, 2026Updated 2 months ago
- Train neural network for semantic segmentation (deep lab V3) with pytorch in less then 50 lines of code☆33Dec 10, 2021Updated 4 years ago
- ☆24Aug 25, 2023Updated 2 years ago
- Best Practices article intended for LiveCoMS☆42Mar 26, 2026Updated 2 weeks ago
- 『Pythonで動かしてはじめる量子化学計算』(コロナ社,2024)☆24Jun 5, 2024Updated last year
- ☆64Dec 10, 2025Updated 4 months ago
- Calculate electron density from a solution scattering profile☆40Jan 28, 2026Updated 2 months ago