ToruNiina / afmize
generate pseudo-AFM image file from structure file
☆12Updated 8 months ago
Alternatives and similar repositories for afmize:
Users that are interested in afmize are comparing it to the libraries listed below
- C++11/Python3 library to read/write High Speed AFM data file☆13Updated last year
- general purpose coarse-grained molecular dynamics simulation package☆32Updated 2 years ago
- Prepare topology and coordinate file for CG models in Genesis.☆11Updated 4 months ago
- 分子シミュレーションの理論や関連するトピックをまとめたノート☆21Updated 10 months ago
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆31Updated 5 months ago
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆21Updated 4 months ago
- 分子動力学法ステップ・バイ・ステップ☆15Updated 5 years ago
- Create coarse grain Martini input files for Gromacs from (atomistic) pdb files.☆32Updated 2 years ago
- Robust Equilibration Detection☆15Updated 3 months ago
- Interactive molecular dynamics based model building into low-resolution crystallographic and cryo-EM maps☆36Updated last month
- ☆51Updated last year
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆11Updated 11 months ago
- Fast PBC wrapping and unwrapping for VMD☆23Updated 2 months ago
- Source code for HOLE program.☆32Updated 5 months ago
- Force fields in various formats☆26Updated 8 months ago
- qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.☆38Updated last week
- An example of how to write a plugin for OpenMM☆31Updated last year
- Software package for FEP☆14Updated 6 months ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- Calculate electron density from a solution scattering profile☆31Updated this week
- ☆15Updated 2 years ago
- Coarse-grained molecular model of DNA (LAMMPS plugin)☆18Updated 2 years ago
- Force Fields☆56Updated this week
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- Tutorials for non-Markovian dynamic models (qMSM and IGME) to study protein dynamics.☆24Updated 5 months ago
- ☆11Updated last year
- ☆20Updated 5 months ago
- Modeling molecular ensembles with scalable data structures and parallel computing☆34Updated last month
- ☆22Updated 3 years ago
- Physical validation of molecular simulations☆56Updated 3 weeks ago