ToruNiina / afmize
generate pseudo-AFM image file from structure file
☆12Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for afmize
- C++11/Python3 library to read/write High Speed AFM data file☆13Updated last year
- general purpose coarse-grained molecular dynamics simulation package☆32Updated last year
- 分子シミュレーションの理論や関連するトピックをまとめたノート☆20Updated 8 months ago
- LOOS: a lightweight object-oriented structure analysis library☆122Updated this week
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆30Updated 2 months ago
- ☆49Updated last year
- PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.☆86Updated 3 months ago
- Force fields in various formats☆25Updated 6 months ago
- Force Fields☆54Updated 6 months ago
- 分子動力学法ステップ・バイ・ステップ☆15Updated 5 years ago
- Tutorials for non-Markovian dynamic models (qMSM and IGME) to study protein dynamics.☆24Updated 2 months ago
- ☆29Updated 3 weeks ago
- learning coarse-grained force fields☆57Updated 2 years ago
- Source code for HOLE program.☆30Updated 2 months ago
- Sire Molecular Simulations Framework☆95Updated last year
- Modeling with limited data☆54Updated 3 weeks ago
- Interactive molecular dynamics based model building into low-resolution crystallographic and cryo-EM maps☆34Updated 2 months ago
- A simple Python library to generate model peptides☆79Updated 3 years ago
- An open set of tools for automating tasks relating to small molecules☆63Updated 3 years ago
- Create coarse grain Martini input files for Gromacs from (atomistic) pdb files.☆32Updated 2 years ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆69Updated 5 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆32Updated 3 months ago
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆28Updated 2 months ago
- A voxel based approach for dynamic cluster analysis of molecular dynamics trajectories.☆25Updated 4 months ago
- OpenMM plugin to interface with PLUMED☆59Updated 6 months ago
- Describe and apply transformation on molecular structures and topologies☆97Updated last week
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆20Updated 2 months ago
- Analysis of non-covalent interactions in MD trajectories☆51Updated last year
- Software for the prediction of DEER and PRE data from conformational ensembles.☆12Updated 2 months ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆57Updated 3 years ago