depablogroup / LAMMPS-3SPN2Links
Coarse-grained molecular model of DNA (LAMMPS plugin)
☆17Updated 3 years ago
Alternatives and similar repositories for LAMMPS-3SPN2
Users that are interested in LAMMPS-3SPN2 are comparing it to the libraries listed below
Sorting:
- TS2CG version 2☆21Updated last month
 - Martini 3 small molecule database☆66Updated last month
 - Physical validation of molecular simulations☆57Updated 3 weeks ago
 - Enhanced sampling methods for molecular dynamics simulations☆40Updated 2 years ago
 - Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated 2 years ago
 - INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems☆68Updated last year
 - A fast solver for large scale MBAR/UWHAM equations☆40Updated last year
 - An open source Python framework for transition interface and path sampling calculations.☆114Updated 4 months ago
 - ☆57Updated 2 years ago
 - Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates☆171Updated 2 weeks ago
 - OpenMM plugin to interface with PLUMED☆69Updated 8 months ago
 - A fully GPU-accelerated molecular dynamics program for the Martini force field☆35Updated 2 years ago
 - Source, test set, and document for Molecular Dynamics software, GENESIS.☆37Updated 8 months ago
 - Describe and apply transformation on molecular structures and topologies☆127Updated this week
 - Main code repository for FATSLiM☆23Updated 3 years ago
 - learning coarse-grained force fields☆64Updated 3 years ago
 - Quantum Mechanical Bespoke Force Field Derivation Toolkit☆102Updated last year
 - Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆80Updated last year
 - ☆75Updated 10 months ago
 - A comprehensive tool for analyzing liquid solvation structure.☆54Updated 3 months ago
 - A Python toolkit for the analyis of lipid membrane simulations☆33Updated last week
 - ☆125Updated last year
 - Automatic MARTINI parametrization of small organic molecules☆69Updated 5 months ago
 - Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Updated 7 years ago
 - MDAnalysis wrapper around Packmol☆33Updated 2 years ago
 - How to analyze molecular dynamics data with PyEMMA☆78Updated 6 years ago
 - ☆11Updated 8 months ago
 - a python package for the interfacial analysis of molecular simulations☆93Updated this week
 - LiveCoMS GROMACS Tutorials Paper☆131Updated 6 years ago
 - Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆44Updated 5 years ago