Coarse-grained molecular model of DNA (LAMMPS plugin)
☆17Apr 12, 2022Updated 4 years ago
Alternatives and similar repositories for LAMMPS-3SPN2
Users that are interested in LAMMPS-3SPN2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆39May 28, 2025Updated last year
- general purpose coarse-grained molecular dynamics simulation package☆35Jan 27, 2023Updated 3 years ago
- Associative memory, Water mediated, Structure and Energy Model (AWSEM) protein simulation code☆42Dec 11, 2025Updated 8 months ago
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- Rigid Body Dynamics with OpenMM☆12May 29, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Generate LAMMPS datafile of confined tribological systems for NEMD simulations. Structure: slab-OFM-alkane-OFM-slab☆12Feb 27, 2026Updated 5 months ago
- Provides some useful information and the LAMMPS input files to model a polymer-metal interface.☆40Nov 11, 2021Updated 4 years ago
- Creating elastic structures using LAMMPS☆12Jan 30, 2023Updated 3 years ago
- ☆14Jul 7, 2016Updated 10 years ago
- Prepare topology and coordinate file for CG models in Genesis.☆13May 14, 2026Updated 3 months ago
- A collection of tools for DNA modelling☆25Jun 4, 2026Updated 2 months ago
- C++11/Python3 library to read/write High Speed AFM data file☆14Apr 14, 2023Updated 3 years ago
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆42Jan 7, 2026Updated 7 months ago
- The standalone code to simulate the oxDNA/oxRNA models, now equipped with Python bindings and the oxDNA_analysis_tools suite☆75Jul 13, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Force fields in various formats☆26May 2, 2024Updated 2 years ago
- Simulation methods for particle systems, materials, and complex fluids with fluctuating hydrodynamics approaches (stochastic immersed bou…☆16Apr 13, 2026Updated 4 months ago
- ☆25Jun 16, 2025Updated last year
- Example files for Colvars module: https://github.com/Colvars/colvars☆14Dec 7, 2021Updated 4 years ago
- Gromacs to Lammps simulation converter☆95Dec 9, 2023Updated 2 years ago
- learning coarse-grained force fields☆66Nov 30, 2021Updated 4 years ago
- This is a repo used for CTBP tech talks☆13Nov 12, 2025Updated 9 months ago
- Lammps tutorial: graphene simulations☆35Aug 27, 2020Updated 5 years ago
- Tree Search Molecular Dynamics Simulation☆11Aug 25, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A plugin that allows the use of Tensorflow in Hoomd-Blue for GPU-accelerated ML+MD☆33Aug 3, 2024Updated 2 years ago
- ☆25Dec 8, 2023Updated 2 years ago
- Examples LAMMPS simulations to generate thermodynamic properties of simple molecular models☆89Nov 9, 2021Updated 4 years ago
- Generate PEG topology for GROMACS and LAMMPS☆26Aug 19, 2024Updated last year
- ☆38Jan 31, 2022Updated 4 years ago
- Tools for coarse-grained molecular dynamics simulations using the SPICA force field☆13May 12, 2026Updated 3 months ago
- Running a molecular simulation with the polarizable force field in LAMMPS☆21Jan 9, 2023Updated 3 years ago
- A bioinformatics toolset for multiomic analysis☆21Updated this week
- OpenSMOG is a Python library for performing molecular dynamics simulations using Structure-Based Models. OpenSMOG uses OpenMM.☆12Jul 10, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- General purpose repository for all things factorio☆16Updated this week
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆119Dec 29, 2018Updated 7 years ago
- VMD plugin for manipulating topology information☆43Jun 2, 2025Updated last year
- ☆14Jul 8, 2020Updated 6 years ago
- ☆18Jan 13, 2023Updated 3 years ago
- Axel Kohlmeyer's development repository of the LAMMPS MD software package☆12Updated this week
- ☆10Mar 31, 2023Updated 3 years ago