Coarse-grained molecular model of DNA (LAMMPS plugin)
☆17Apr 12, 2022Updated 4 years ago
Alternatives and similar repositories for LAMMPS-3SPN2
Users that are interested in LAMMPS-3SPN2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM☆19Oct 1, 2026Updated last week
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆39May 28, 2025Updated last year
- Associative memory, Water mediated, Structure and Energy Model (AWSEM) protein simulation code☆42Dec 11, 2025Updated 9 months ago
- Rigid Body Dynamics with OpenMM☆12May 29, 2018Updated 8 years ago
- Provides some useful information and the LAMMPS input files to model a polymer-metal interface.☆40Nov 11, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Creating elastic structures using LAMMPS☆12Jan 30, 2023Updated 3 years ago
- ☆14Jul 7, 2016Updated 10 years ago
- Prepare topology and coordinate file for CG models in Genesis.☆13Sep 25, 2026Updated 2 weeks ago
- A collection of tools for DNA modelling☆26Jun 4, 2026Updated 4 months ago
- C++11/Python3 library to read/write High Speed AFM data file☆14Apr 14, 2023Updated 3 years ago
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆43Jan 7, 2026Updated 9 months ago
- Force fields in various formats☆26May 2, 2024Updated 2 years ago
- Simulation methods for particle systems, materials, and complex fluids with fluctuating hydrodynamics approaches (stochastic immersed bou…☆16Apr 13, 2026Updated 5 months ago
- ☆26Jun 16, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Example files for Colvars module: https://github.com/Colvars/colvars☆14Dec 7, 2021Updated 4 years ago
- learning coarse-grained force fields☆65Nov 30, 2021Updated 4 years ago
- This is a repo used for CTBP tech talks☆13Nov 12, 2025Updated 10 months ago
- Lammps tutorial: graphene simulations☆35Aug 27, 2020Updated 6 years ago
- Tree Search Molecular Dynamics Simulation☆11Aug 25, 2019Updated 7 years ago
- ☆25Dec 8, 2023Updated 2 years ago
- Examples LAMMPS simulations to generate thermodynamic properties of simple molecular models☆89Nov 9, 2021Updated 4 years ago
- Generate PEG topology for GROMACS and LAMMPS☆26Aug 19, 2024Updated 2 years ago
- ☆39Jan 31, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools for coarse-grained molecular dynamics simulations using the SPICA force field☆13May 12, 2026Updated 4 months ago
- Running a molecular simulation with the polarizable force field in LAMMPS☆21Jan 9, 2023Updated 3 years ago
- A bioinformatics toolset for multiomic analysis☆22Aug 17, 2026Updated last month
- General purpose repository for all things factorio☆16Oct 2, 2026Updated last week
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆119Dec 29, 2018Updated 7 years ago
- VMD plugin for manipulating topology information☆42Jun 2, 2025Updated last year
- ☆19Jan 13, 2023Updated 3 years ago
- Axel Kohlmeyer's development repository of the LAMMPS MD software package☆12Updated this week
- ☆10Mar 31, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A fast solver for large scale MBAR/UWHAM equations☆42Sep 4, 2024Updated 2 years ago
- Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B J. Chem. Theory Comput. 2021, 17, 3134. (https://pubs.acs.org/d…☆11Jun 16, 2022Updated 4 years ago
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆14Oct 19, 2022Updated 3 years ago
- This package is an open-source (GPLv3) interface between QM and MM software so that QM/MM calculations can be performed with polarizable …☆17Jul 27, 2026Updated 2 months ago
- Geometric super-resolution for molecular geometries☆43Jun 15, 2022Updated 4 years ago
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆94Jan 27, 2025Updated last year
- Training code used to optimize reaxff force field (via LAMMPS)☆20May 29, 2017Updated 9 years ago