general purpose coarse-grained molecular dynamics simulation package
☆35Jan 27, 2023Updated 3 years ago
Alternatives and similar repositories for Mjolnir
Users that are interested in Mjolnir are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- C++11/Python3 library to read/write High Speed AFM data file☆14Apr 14, 2023Updated 3 years ago
- Prepare topology and coordinate file for CG models in Genesis.☆13May 14, 2026Updated last month
- Coarse-grained molecular model of DNA (LAMMPS plugin)☆17Apr 12, 2022Updated 4 years ago
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆42Jan 7, 2026Updated 5 months ago
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆23Mar 21, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phen…☆18Apr 6, 2026Updated 2 months ago
- An implementation of SEPARO, a board game, with Monte Carlo Tree Search algorithm in Rust/wasm.☆20Sep 27, 2020Updated 5 years ago
- Auto-differentiated descriptors using Enzyme☆12Apr 2, 2025Updated last year
- An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM☆19Jun 5, 2026Updated 3 weeks ago
- ☆64Dec 10, 2025Updated 6 months ago
- generate pseudo-AFM image file from structure file☆16May 15, 2024Updated 2 years ago
- USER-MESO package for LAMMPS☆13Oct 9, 2016Updated 9 years ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆39May 28, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- learning coarse-grained force fields☆66Nov 30, 2021Updated 4 years ago
- 分子動力学法の理論と実装(集中講義ノート)☆32May 31, 2025Updated last year
- Unified Free Energy Dynamics (UFED) simulations with OpenMM☆36Aug 20, 2025Updated 10 months ago
- Particle-mesh based calculations of long-range interactions in JAX☆30Jun 22, 2026Updated last week
- Constant pH simulation with OpenMM☆20Mar 10, 2026Updated 3 months ago
- Library for computing anisotropy extension to SOAP descriptors☆11Jun 19, 2026Updated 2 weeks ago
- A package for deriving coarse-grain potentials using MultiState Iterative Boltzmann Inversion (MS-IBI)☆19Jun 2, 2026Updated last month
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆67Nov 26, 2025Updated 7 months ago
- Geometric super-resolution for molecular geometries☆43Jun 15, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Coarse-graining potentials from atomistic references made easy☆26Sep 27, 2021Updated 4 years ago
- Julia bindings to chemfiles☆43Aug 22, 2025Updated 10 months ago
- Lightweight induced fit docking☆22May 22, 2023Updated 3 years ago
- A CUDA project for Molecular Dynamics, Brownian Dynamics, Hydrodynamics... intended to simulate a very generic system constructing a simu…☆66Apr 30, 2026Updated 2 months ago
- 『Pythonで動かしてはじめる量子化学計算』(コロナ社,2024)☆24Jun 5, 2024Updated 2 years ago
- Computer-Aided Process Planner (CAPP) for Synthetic Biology Research☆11Jun 1, 2021Updated 5 years ago
- Machine learning interatomic potential for condensed-phase reactive chemistry☆22Jun 6, 2024Updated 2 years ago
- Analysing trajectories with chemfiles☆13Jan 6, 2023Updated 3 years ago
- A tiny package to compute the dynamics of stochastic and molecular simulations☆33Jul 11, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Universal extensible molecular simulation engine☆209Feb 9, 2024Updated 2 years ago
- Run OpenMM with forces provided by any Python program☆43Dec 25, 2024Updated last year
- Extensible Surrogate Potential of Ab initio Learned and Optimized by Message-passing Algorithm 🍹https://arxiv.org/abs/2010.01196☆274Apr 16, 2026Updated 2 months ago
- [ICLR 2021] Group Equivariant Generative Adversarial Networks.☆14May 6, 2021Updated 5 years ago
- OpenMM plugin to interface with PLUMED☆79Jan 15, 2026Updated 5 months ago
- ☆14Jun 23, 2026Updated last week
- A bioinformatics toolset for multiomic analysis☆21May 19, 2026Updated last month