Mjolnir-MD / MjolnirLinks
general purpose coarse-grained molecular dynamics simulation package
☆35Updated 2 years ago
Alternatives and similar repositories for Mjolnir
Users that are interested in Mjolnir are comparing it to the libraries listed below
Sorting:
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆39Updated 2 weeks ago
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆21Updated 10 months ago
- 分子シミュレーションの理論や関連するトピックをまとめたノート☆26Updated last year
- Prepare topology and coordinate file for CG models in Genesis.☆13Updated 6 months ago
- Sire Molecular Simulations Framework☆96Updated 2 years ago
- An example of how to write a plugin for OpenMM☆31Updated last year
- NAMD's psfgen + Python improvements☆16Updated last year
- learning coarse-grained force fields☆65Updated 4 years ago
- COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM☆15Updated 5 months ago
- Modeling molecular ensembles with scalable data structures and parallel computing☆36Updated last week
- OpenMM plugin to interface with XTB☆19Updated 2 months ago
- Create coarse grain Martini input files for Gromacs from (atomistic) pdb files.☆39Updated 3 years ago
- A fully GPU-accelerated molecular dynamics program for the Martini force field☆35Updated 2 years ago
- Enhanced sampling methods for molecular dynamics simulations☆41Updated 3 years ago
- Source code and input files associated to the paper "Targeted free energy perturbation revisited: Accurate free energies from mapped refe…☆13Updated 4 years ago
- OpenMM plugin to interface with PLUMED☆73Updated last week
- Force Distribution Analysis (FDA) for GROMACS☆35Updated last year
- Modeling with limited data☆60Updated last month
- psi4+RDKit☆104Updated 8 months ago
- Get access to our MD data files.☆30Updated 2 years ago
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆12Updated last year
- ☆29Updated 2 years ago
- STORMM: Structure and TOpology Replica Molecular Mechanics☆82Updated 4 months ago
- Coarse-grained molecular model of DNA (LAMMPS plugin)☆17Updated 3 years ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆55Updated last year
- ☆61Updated last month
- Robust Equilibration Detection☆26Updated 4 months ago
- An application for configuring and running simulations with OpenMM☆76Updated 2 months ago
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆80Updated last year
- ☆80Updated last week