MasatakaYm / Molecular-SimulationLinks
分子シミュレーションの理論や関連するトピックをまとめたノート
☆26Updated last year
Alternatives and similar repositories for Molecular-Simulation
Users that are interested in Molecular-Simulation are comparing it to the libraries listed below
Sorting:
- PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis☆19Updated 6 months ago
- Dashboard for LLM Drug Discovery Challenge.☆13Updated 2 years ago
- Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface☆37Updated 3 years ago
- ☆56Updated 2 years ago
- Sample code for "Predicting polymer-solvent miscibility using machine-learned Flory-Huggins interaction parameters☆16Updated last year
- 『Pythonで動かしてはじめる量子化学計算』(コロナ社,2024)☆19Updated last year
- Robust Equilibration Detection☆25Updated last month
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆36Updated 7 months ago
- 分子動力学法ステップ・バイ・ステップ☆16Updated 6 years ago
- Martini 3 small molecule database☆65Updated last week
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- OpenMM plugin to interface with PLUMED☆68Updated 7 months ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- learning coarse-grained force fields☆63Updated 3 years ago
- Automatic MARTINI parametrization of small organic molecules☆69Updated 4 months ago
- ☆65Updated 2 months ago
- ☆72Updated 9 months ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- xyz2mol for transition metal complexes.☆14Updated 7 months ago
- general purpose coarse-grained molecular dynamics simulation package☆35Updated 2 years ago
- The public versio☆65Updated 2 years ago
- Create coarse grain Martini input files for Gromacs from (atomistic) pdb files.☆37Updated 2 years ago
- An Open-Source Molecular Builder and Free Energy Preparation Workflow☆130Updated last week
- ☆11Updated 7 months ago
- rule-based virtual polymer library generator☆46Updated 3 weeks ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- Density based object completion over PBC.☆30Updated 10 months ago
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆67Updated last week
- ☆40Updated 11 months ago
- Describe and apply transformation on molecular structures and topologies☆121Updated 2 weeks ago