BioEn - Bayesian Inference Of ENsembles
☆24Feb 6, 2024Updated 2 years ago
Alternatives and similar repositories for BioEn
Users that are interested in BioEn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …☆12Apr 7, 2023Updated 3 years ago
- Bayesian inference of conformational populations☆14Jun 11, 2025Updated last year
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆22Mar 13, 2018Updated 8 years ago
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆13Feb 20, 2024Updated 2 years ago
- MDToolbox: A MATLAB/Octave toolbox for statistical analysis of molecular dynamics trajectories☆26Dec 7, 2019Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- HDXer is a package to compute Hydrogen-Deuterium exchange data from biomolecular simulations, compare to experiment, and perform ensemble…☆21Apr 17, 2023Updated 3 years ago
- ☆15Apr 7, 2022Updated 4 years ago
- C++11/Python3 library to read/write High Speed AFM data file☆14Apr 14, 2023Updated 3 years ago
- Analyse Rotational Diffusion Tensor from MD Simulations☆22Oct 31, 2024Updated last year
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 6 months ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆10Jun 13, 2022Updated 4 years ago
- Calculate electron density from a solution scattering profile☆40Jul 9, 2026Updated last week
- Force Fields☆14Oct 25, 2022Updated 3 years ago
- Modeling with limited data☆65Dec 15, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16May 11, 2026Updated 2 months ago
- Implementation of corrections for diffusion coefficients in membrane simulations.☆10Aug 2, 2022Updated 3 years ago
- Protocols for running MD simulations in Gromacs☆11Jun 18, 2024Updated 2 years ago
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆84Sep 5, 2024Updated last year
- A manually curated lists of software, publications and other resources related to the analysis of HDX-MS data.☆12Dec 15, 2025Updated 7 months ago
- Add the lookahead & lookbehind assertions to Emacs regular expressions☆13Mar 3, 2015Updated 11 years ago
- 2D Ising model in C++, including IPython notebook examples☆12Nov 14, 2019Updated 6 years ago
- Najmanovich Research Group Toolkit for Elastic Networks☆13Apr 5, 2023Updated 3 years ago
- Repository for material from the 2022 MC/MD Summer Workshop☆14Jul 12, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This site contains all document relevant for the Machine Learning courses of the Erasmus+ network. Jupyter-book link at https://compphys…☆14Jan 18, 2024Updated 2 years ago
- Entropy from PDB conformational ensembles☆13Mar 28, 2024Updated 2 years ago
- Diffusion maps for python☆12Apr 19, 2020Updated 6 years ago
- Geometric super-resolution for molecular geometries☆43Jun 15, 2022Updated 4 years ago
- Emacs Math Symbol Input and LaTeX conversion tools.☆15Oct 5, 2020Updated 5 years ago
- A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.☆11Apr 26, 2026Updated 2 months ago
- Modeling molecular ensembles with scalable data structures and parallel computing☆37Mar 11, 2026Updated 4 months ago
- Grid generation for scientific computations☆17Mar 6, 2022Updated 4 years ago
- Following Steve Brunton's book and code☆16Oct 23, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Compare optimized geometries and energies from various force fields with respect to a QM reference.☆14Apr 19, 2021Updated 5 years ago
- Chinese Lunar Calendar Toolkit Script☆14Oct 6, 2015Updated 10 years ago
- pyABC: distributed, likelihood-free inference☆13Jan 26, 2018Updated 8 years ago
- Exploratory PyMOL-MDAnalysis molecular visualization system.☆19Apr 14, 2022Updated 4 years ago
- ☆14Jun 11, 2024Updated 2 years ago
- ☆22Mar 2, 2026Updated 4 months ago
- Accelerated protein structural generation flow-matching model based on Apple's SimpleFold.☆17May 6, 2026Updated 2 months ago