bio-phys / BioEnLinks
BioEn - Bayesian Inference Of ENsembles
☆19Updated last year
Alternatives and similar repositories for BioEn
Users that are interested in BioEn are comparing it to the libraries listed below
Sorting:
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆79Updated 9 months ago
- High level API for using machine learning models in OpenMM simulations☆112Updated 3 months ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆53Updated last year
- ☆66Updated last week
- Physical validation of molecular simulations☆56Updated 2 months ago
- A comprehensive toolkit for predicting free energies☆53Updated 5 months ago
- Modeling molecular ensembles with scalable data structures and parallel computing☆36Updated this week
- How to analyze molecular dynamics data with PyEMMA☆76Updated 6 years ago
- Sire Molecular Simulations Framework☆57Updated this week
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆114Updated 6 years ago
- Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards☆43Updated 3 years ago
- 📐 Symmetry-corrected RMSD in Python☆98Updated last month
- An interoperable Python framework for biomolecular simulation.☆115Updated last week
- An open set of tools for automating tasks relating to small molecules☆66Updated 3 years ago
- Package for consistent reporting of relative free energy results☆39Updated last week
- The OpenMM Cookbook and Tutorials☆44Updated last year
- Modeling with limited data☆58Updated 7 months ago
- An open source Python framework for transition interface and path sampling calculations.☆111Updated 3 weeks ago
- STORMM: Structure and TOpology Replica Molecular Mechanics☆62Updated last month
- Best practice document for alchemical free energy calculations going to livecoms journal☆74Updated 2 weeks ago
- ☆54Updated 2 years ago
- An example of how to write a plugin for OpenMM☆31Updated last year
- LOOS: a lightweight object-oriented structure analysis library☆125Updated 2 months ago
- A machine learned Molecular Mechanics force field with integration into GROMACS and OpenMM☆46Updated 3 weeks ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆60Updated last year
- Given an RDKit molecule that does not sanitise, correct it until it does☆41Updated last year
- Example to fit parameters and run CG simulations using TorchMD and Schnet☆46Updated 3 years ago
- ☆36Updated 9 months ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆34Updated last month