fjclark / redLinks
Robust Equilibration Detection
☆22Updated 2 months ago
Alternatives and similar repositories for red
Users that are interested in red are comparing it to the libraries listed below
Sorting:
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆14Updated last week
- Set up relative free energy calculations using a common scaffold☆24Updated 2 months ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 2 years ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆39Updated last week
- ☆28Updated last month
- Standalone charge assignment from Espaloma framework.☆39Updated 11 months ago
- ☆36Updated 9 months ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆24Updated 5 years ago
- Scripts, inputs and the results generated as part of the training the Sage line of OpenFF force fields.☆21Updated last year
- a high-throughput alchemical free energy execution system for use with HPC, cloud, bare metal, and Folding@Home☆28Updated 3 weeks ago
- Algorithms for various Network Layouts and Tooling for planning FE Calculations☆19Updated last week
- Transferable Double Exponential non-bonded potential for condensed phase simulations of small molecules☆22Updated 10 months ago
- Enhanced sampling methods for molecular dynamics simulations☆37Updated 2 years ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆31Updated 3 weeks ago
- Repository for the 2024 OpenFE industry benchmark efforts☆22Updated last week
- A tutorials suite for BioSimSpace.☆25Updated last month
- Density based object completion over PBC.☆30Updated 6 months ago
- OpenFF NAGL☆16Updated this week
- Advanced toolkit for binding free energy calculations☆32Updated last week
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆46Updated 4 years ago
- RESP with inter- and intra-molecular constraints in Psi4.☆31Updated 2 years ago
- ☆12Updated last week
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- This package contains tools for setting up hybrid-topology FE calculations☆29Updated last month
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆32Updated last week
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆13Updated last month