分子動力学法ステップ・バイ・ステップ
☆17Oct 13, 2019Updated 6 years ago
Alternatives and similar repositories for mdstep
Users that are interested in mdstep are comparing it to the libraries listed below
Sorting:
- SIEVE-Score: interaction energy-based virtual screening method based on random forest.☆14Sep 15, 2023Updated 2 years ago
- 分子動力学法の理論と実装(集中講義ノート)☆32May 31, 2025Updated 9 months ago
- [WWW 25] USPTO-LLM: A Large Language Model-Assisted Information-enriched Chemical Reaction Dataset☆16Dec 12, 2024Updated last year
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Aug 27, 2024Updated last year
- Code for training a language model reaction predictor. (To accompany our paper on the OOD evaluation of reaction predictors).☆12Jan 13, 2025Updated last year
- 分子シミュレーションの理論や関連するトピックをまとめたノート☆28Mar 7, 2024Updated last year
- Dashboard for LLM Drug Discovery Challenge.☆14Sep 6, 2023Updated 2 years ago
- ☆11Oct 1, 2021Updated 4 years ago
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆21Mar 21, 2025Updated 11 months ago
- ☆17Dec 5, 2025Updated 3 months ago
- rule-based virtual polymer library generator☆48Dec 23, 2025Updated 2 months ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- Generate PEG topology for GROMACS and LAMMPS☆25Aug 19, 2024Updated last year
- Software package for FEP☆22Feb 25, 2026Updated last week
- ☆21Aug 16, 2019Updated 6 years ago
- ☆28Feb 22, 2026Updated last week
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆32Dec 18, 2025Updated 2 months ago
- ☆25Oct 14, 2020Updated 5 years ago
- ICLR 2025 paper: 3DMolFormer: A Dual-channel Framework for Structure-based Drug Discovery☆27Apr 25, 2025Updated 10 months ago
- Code for paper "Human-in-the-Loop Assisted de Novo Molecular Design".☆23Mar 17, 2023Updated 2 years ago
- Offical repository for the paper "Llamol: a dynamic multi-conditional generative transformer for de novo molecular design" (https://doi.o…☆30Jun 25, 2024Updated last year
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆64Dec 22, 2025Updated 2 months ago
- ☆28Mar 16, 2023Updated 2 years ago
- Plugin for folding sequences directly in PyMOL☆27Aug 5, 2025Updated 6 months ago
- 化学反応解析ソフトCanteraの情報☆10Apr 15, 2025Updated 10 months ago
- PyL3dMD: Python LAMMPS 3D Molecular Descriptors Package☆32Jul 1, 2024Updated last year
- Tree-Invent: A novel molecular generative model constrained with topological tree☆13Jul 26, 2023Updated 2 years ago
- A fragment-based molecular assembly toolkit☆43Dec 4, 2025Updated 3 months ago
- 『ゼロから作る Deep Learning ❻』☆78Feb 22, 2026Updated last week
- Jupyter Notebook Tutorials for Creating Chemical Space Networks☆38Dec 27, 2023Updated 2 years ago
- The code for the QuickVina homepage.☆36Nov 7, 2022Updated 3 years ago
- ☆16Dec 2, 2025Updated 3 months ago
- Prepare topology and coordinate file for CG models in Genesis.☆13Jul 3, 2025Updated 8 months ago
- Bayesian inference of conformational populations☆13Jun 11, 2025Updated 8 months ago
- ローカルLLMの解説本のサンプル一式☆23Sep 20, 2025Updated 5 months ago
- Streamlit web application to deploy a machine learning binary classifier to predict the activity of antimicrobial peptides☆10Dec 13, 2022Updated 3 years ago
- This repository gathers the NNAIMGUI code along with some instructions and readme files.☆11Mar 22, 2024Updated last year
- Public version for DistPepFold☆10Jul 17, 2025Updated 7 months ago
- Automatically exported from code.google.com/p/pyplif☆10Nov 23, 2018Updated 7 years ago