ImagingDataCommons / idc-index
Python package to simplify access to the data available from NCI Imaging Data Commons
☆11Updated this week
Related projects ⓘ
Alternatives and complementary repositories for idc-index
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆24Updated 9 months ago
- 3D Slicer extension for streamlined annotation of images☆11Updated 6 months ago
- Python package for DICOM-SEG medical segmentation file reading and writing☆78Updated last year
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆35Updated this week
- A project to provide custom sorting and renaming of dicom files☆74Updated 4 months ago
- Python wrapper for Plastimatch.☆10Updated 2 months ago
- Config-based framework for organized and reproducible deep learning. MONAI Bundle + PyTorch Lightning.☆22Updated last week
- Workshop on Medical Image Analysis using pydicom, SimpleITK, ITK, itkwidgets, numpy, seaborn, and matplotlib☆13Updated 4 years ago
- Extension for 3D Slicer for running MONAI Auto3DSeg models☆66Updated 3 weeks ago
- Transparent and reproducible medical image processing pipelines in Python.☆36Updated this week
- Processing Library and Analysis Toolkit for Medical Imaging in Python☆117Updated this week
- The easiest tool for experimenting with radiomics features.☆37Updated 6 months ago
- Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created t…☆25Updated last month
- Self-guided notebook tutorials to help get started with using IDC☆28Updated last week
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆77Updated last month
- Precision medicine toolbox☆60Updated 7 months ago
- Automatic sorting of brain MRI scans by scan type☆24Updated 3 weeks ago
- nii2dcm: NIfTI to DICOM creation with Python☆60Updated 7 months ago
- XNAT plugin which integrates the OHIF Viewer into XNAT (SEE README)☆11Updated 5 years ago
- An AI-powered open-source medical image analysis toolbox☆58Updated 3 months ago
- Python Library to handle Input / Output conversion in Dicom <=> Convolutional Neural Network☆16Updated 3 years ago
- Fast Pythonic data structures and tools for wrangling medical images.☆24Updated 11 months ago
- Medical Image Radiomics Processor☆53Updated 2 months ago
- This repository employs a deep-learning method for the automated segmentation of total metabolic tumor volume (TMTV) in whole-body [18]F-…☆15Updated 2 months ago
- Website for NA-MIC Project Weeks☆84Updated this week
- Tool to anonymize DICOM files according to the DICOM standard☆104Updated 2 months ago
- Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and Simpl…☆91Updated last month
- Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix☆46Updated 6 months ago
- Conversion tool/library for converting whole slide images to DICOM☆77Updated 6 months ago