Codebase for NaFM: Pre-training a Foundation Model for Small-Molecule Natural Products
☆27May 10, 2026Updated 4 months ago
Alternatives and similar repositories for NaFM-Official
Users that are interested in NaFM-Official are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…☆16Jan 22, 2026Updated 8 months ago
- ☆14Dec 2, 2024Updated last year
- Clustering and visualization of billions of molecules (or other high-dimensional data). 1 billion, 100K clusters, less than 3 hours, one …☆23Sep 5, 2026Updated last month
- ☆123Mar 10, 2026Updated 6 months ago
- LLMs for high-throughput mining and generation of antimicrobial peptides☆28Oct 10, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Using a joint AE and property prediction model to estimate OOD molecules and quantify uncertainty☆28Apr 25, 2026Updated 5 months ago
- AI for Chemical Spectra☆19Updated this week
- FuncFetch workflow scripts☆15Jun 9, 2025Updated last year
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆14Feb 11, 2026Updated 7 months ago
- Official code repository for the paper READRetro: Natural Product Biosynthesis Planning with Retrieval-Augmented Dual-View Retrosynthesis☆24Jun 8, 2024Updated 2 years ago
- Transformers for gene expression prediction from raw dna sequences☆16Apr 29, 2022Updated 4 years ago
- This is the code associated to the paper about the MultiModalSpectralTransformer, capable of predicting molecules from spectral data (1H,…☆18Oct 7, 2025Updated 11 months ago
- Highly accurate discovery of terpene synthases powered by machine learning☆17Sep 15, 2026Updated 2 weeks ago
- ☆13Aug 26, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The code for SCAGE.☆25Nov 30, 2025Updated 10 months ago
- LillyMol Public Code☆18Updated this week
- ☆25Jul 20, 2026Updated 2 months ago
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆25Aug 14, 2026Updated last month
- ☆21Oct 31, 2024Updated last year
- Serializing molecule 3D structures☆14Nov 27, 2024Updated last year
- ☆25Mar 27, 2026Updated 6 months ago
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆25May 11, 2025Updated last year
- A machine learning model based on gradient boosting decision tree for predicting heavy metal adsorption in soil.☆19Nov 6, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- [ICML 2025] Hierarchical Graph Tokenization for Molecule-Language Alignment☆17Aug 18, 2025Updated last year
- ☆27Mar 20, 2026Updated 6 months ago
- An extension of the ProteoWizard framework enabling the support of the mzDB format☆14Feb 12, 2021Updated 5 years ago
- A geometric foundation model for enzyme retrieval with evolutionary insights.☆103Jul 29, 2026Updated 2 months ago
- ☆84Feb 17, 2026Updated 7 months ago
- FASTDock: A Pipeline for Allosteric Drug Discovery - example scripts and jupyter notebook☆19Jun 10, 2023Updated 3 years ago
- [Sci. Adv. 2026] The official repository of our paper "Steering Semi-flexible Molecular Diffusion Model for Structure-Based Drug Design w…☆34May 2, 2026Updated 5 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- This is for the AI enzyme design course☆20Nov 10, 2025Updated 10 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A curated biochemical database that integrates and refines data from KEGG and ATLAS databases to support precise analyses of biochemical …☆16May 13, 2026Updated 4 months ago
- Solv@TUM - The Solvation Free Energy Database☆15Mar 31, 2024Updated 2 years ago
- ☆37Jul 13, 2026Updated 2 months ago
- gpu implementation mopac☆16Sep 26, 2026Updated last week
- Protein representation and design under a single training scheme☆25May 17, 2026Updated 4 months ago
- 🤖 MetaboT 🍵 is an AI system that accelerates mass spectrometry-(MS) based metabolomics knowledge graph mining☆35May 7, 2026Updated 4 months ago
- Source code of MOLLEO☆58Sep 5, 2026Updated last month