chufangao / CTOD
Code for CTO: A Large Clinical Trial Outcome and QA Dataset
☆21Updated this week
Alternatives and similar repositories for CTOD:
Users that are interested in CTOD are comparing it to the libraries listed below
- ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs☆65Updated 10 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆39Updated 3 months ago
- PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development☆93Updated last year
- Code repository to create the MIMIC-CDM Dataset.☆27Updated last month
- Findings of EMNLP'22 | Trial2Vec: Zero-Shot Clinical Trial Document Similarity Search using Self-Supervision☆22Updated 11 months ago
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆106Updated 6 months ago
- Data from BioPlanner: Automatic Evaluation of LLMs on Protocol Planning in Biology paper☆24Updated 8 months ago
- ☆13Updated last week
- ☆33Updated last year
- [EMNLP'24] EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on Electronic Health Records☆82Updated 2 months ago
- Medical reasoning using large language models☆87Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated 10 months ago
- Biomedical Question Answering Datasets.☆95Updated last year
- This repo is for the Open Protein Instructions (OPI) project, aiming to build and release a high-quality and comprehensive protein instru…☆4Updated this week
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Updated last year
- [ACL 2024 Findings] This is the code for our paper "Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation wi…☆38Updated 8 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆43Updated last year
- EMNLP'22 | PromptEHR: Conditional Electronic Healthcare Records Generation with Prompt Learning☆28Updated last year
- BioMedBERT: A Pre-trained Biomedical Language Model for QA and IR☆27Updated 4 years ago
- ISMB'24 "Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models"☆54Updated 11 months ago
- Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records☆20Updated 6 months ago
- The code for the paper "MediTab: Scaling Medical Tabular Data Predictors via Data Consolidation, Enrichment, and Refinement"☆18Updated 10 months ago
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆168Updated 11 months ago
- ☆15Updated 6 months ago
- [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp…☆58Updated 2 months ago
- Papers about scientific hypothesis generation with large language models (LLMs).☆57Updated 2 weeks ago
- The code for "Learning Molecular Representation in a Cell"☆23Updated last week
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆110Updated last year
- benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, p…☆112Updated 8 months ago