Alternatives and similar repositories for research

Users that are interested in research are comparing it to the libraries listed below

• jean-pierreBoth / probminhash
  Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms
  ☆30Updated 5 months ago
• BioRadOpenSource / ish
  Alignment-based filtering CLI tool
  ☆56Updated last month
• tfenne / pipebuffer
  A command line program for large scale buffering between piped programs
  ☆16Updated 4 years ago
• slotThe / rq
  Functional command-line JSON processor with a bidirectional type system
  ☆25Updated 6 months ago
• Daniel-Liu-c0deb0t / cute-nucleotides
  Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
  ☆129Updated 4 years ago
• samuell / gccontent-benchmark
  Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
  ☆57Updated 2 years ago
• Daniel-Liu-c0deb0t / simple-saca
  Hardware go brrr bounded context suffix array construction algorithm
  ☆19Updated 2 years ago
• dcjones / coitrees
  A very fast interval tree data structure
  ☆124Updated 10 months ago
• kampersanda / sucds
  Collection of succinct data structures in Rust
  ☆100Updated 4 months ago
• RagnarGrootKoerkamp / PtrHash
  PtrHash minimal perfect hash function
  ☆84Updated 3 months ago
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆26Updated 7 months ago
• 10XGenomics / rust-boomphf
  Fast and scalable minimal perfect hashing for massive key sets
  ☆146Updated last year
• spiraldb / alp
  ALP floating point compression in Rust
  ☆46Updated last week
• jltsiren / simple-sds
  Simple succinct data structures (in Rust)
  ☆51Updated last year
• rossanoventurini / qwt
  A Rust implementation of the Quad Wavelet Tree
  ☆46Updated last month
• frjnn / bhtsne
  Parallel Barnes-Hut t-SNE implementation written in Rust.
  ☆87Updated 4 months ago
• habedi / graphina
  A graph data science library for Rust 🦀 with Python bindings 🐍
  ☆72Updated 3 weeks ago
• mlochbaum / rhsort
  Robin Hood Sort, for uniform data
  ☆75Updated 2 years ago
• mrkline / piz-rs
  Parallelized zip archive reading
  ☆38Updated 11 months ago
• Cydhra / vers
  Succinct data structures using very efficient rank and select
  ☆127Updated last week
• lazear / simd-euclidean
  Calculation of euclidean distance between vectors, with SIMD
  ☆11Updated last year
• biointec / columba
  Fast Approximate Pattern Matching using Search Schemes
  ☆16Updated last month
• vigna / sux-rs
  Rust implementations of succinct data structures
  ☆67Updated this week
• nnethercott / hannoy
  Production-ready KV-backed HNSW implementation in Rust using LMDB
  ☆35Updated last week
• andreacorbellini / rust-atomic-write-file
  ☆31Updated 2 months ago
• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆41Updated 3 months ago
• CarlKCarlK / range-set-blaze
  Integer sets as fast, sorted, integer ranges with full set operations
  ☆101Updated last month
• kensho-technologies / sequence_align
  Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
  ☆74Updated 9 months ago
• ajalab / fm-index
  FM-index for Rust
  ☆25Updated 7 months ago
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆20Updated last month