Blog on postdoc @ KIT Karlsruhe
☆38Feb 27, 2026Updated last week
Alternatives and similar repositories for research
Users that are interested in research are comparing it to the libraries listed below
Sorting:
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- high-performance BED-to-GTF converter written in Rust☆18Nov 20, 2024Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆18Jul 15, 2022Updated 3 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 2 years ago
- Repository☆10Oct 23, 2024Updated last year
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- ☆24Nov 9, 2017Updated 8 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 4 months ago
- ☆10Jan 30, 2020Updated 6 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated last week
- ☆10Dec 2, 2025Updated 3 months ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 2 years ago
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Feb 29, 2024Updated 2 years ago
- PyPop: Python for Population Genomics☆25Updated this week
- LZMA handling library.☆11May 2, 2017Updated 8 years ago
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- My submissions for the #30DayChartChallenge held on April 2022☆14May 11, 2022Updated 3 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 4 months ago
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆13Feb 14, 2024Updated 2 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆14Feb 23, 2023Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- Scripts for next generation sequencing analyses☆15Nov 6, 2025Updated 4 months ago
- Plot allele frequencies in VCF files☆11Jun 4, 2019Updated 6 years ago
- My attempts at recreating the visualisations by W.E.B. DuBois as part of the DuBois Challenge.☆11Jan 5, 2023Updated 3 years ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆13Dec 6, 2021Updated 4 years ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago