B-field implementation in Rust
☆205Jun 24, 2025Updated last year
Alternatives and similar repositories for rust-bfield
Users that are interested in rust-bfield are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last week
- ☆21Feb 15, 2025Updated last year
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated last year
- Bloom filter implementation in Nimrod☆16May 26, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A Rust-based library for phylogenetic analysis and manipulation☆22Aug 8, 2026Updated 3 weeks ago
- ☆11Dec 24, 2024Updated last year
- Succinct data structures using very efficient rank and select☆133Aug 10, 2026Updated 2 weeks ago
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Feb 19, 2020Updated 6 years ago
- What do you call a pointer we stole the high bits off? An ointer.☆94Dec 10, 2025Updated 8 months ago
- my personal blog by astro☆25Mar 26, 2025Updated last year
- ☆21Dec 26, 2025Updated 8 months ago
- Unsafely fast hashing algorithm 📈☆1,022Mar 4, 2026Updated 5 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆28Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 3 years ago
- Simple succinct data structures (in Rust)☆54Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆32Aug 21, 2026Updated last week
- Linear-time, low-memory construction of variation graphs☆20Updated this week
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Jun 22, 2026Updated 2 months ago
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated last year
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆108Updated this week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Compiler front-end foundation technology.☆482Feb 10, 2026Updated 6 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Updated this week
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆49Aug 19, 2026Updated last week
- Low latency inter-thread communication library in Rust inspired by the LMAX Disruptor.☆899Aug 8, 2026Updated 3 weeks ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 4 years ago
- The fastest 128-bit and 256-bit hash, passes all tests, and under 140 source lines of code. API library and CLI tool in C++ and NodeJS/Wa…☆134Jul 27, 2026Updated last month
- Rust implementation of the Zstandard Seekable Format☆277Aug 6, 2026Updated 3 weeks ago
- ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything☆19Aug 17, 2026Updated last week
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- Rust implementation of the XXH3 hash function☆28Aug 10, 2025Updated last year