BIDS-Xu-Lab / Biomedical-NLP-BenchmarksLinks
Benchmark Datasets for BioNLP Tasks
☆13Updated 2 months ago
Alternatives and similar repositories for Biomedical-NLP-Benchmarks
Users that are interested in Biomedical-NLP-Benchmarks are comparing it to the libraries listed below
Sorting:
- System for Medical Concept Extraction and Linking☆409Updated 11 months ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆330Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆149Updated last year
- Python wraper for MetaMap☆174Updated 4 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆81Updated last month
- ☆152Updated last year
- ☆218Updated 7 months ago
- ☆18Updated last year
- Medical Concept Annotation Tool☆503Updated last week
- ☆65Updated 4 years ago
- A Serverless Text Annotation Tool for Corpus Development☆56Updated 4 months ago
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆16Updated 3 years ago
- ☆98Updated 3 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆20Updated 6 years ago
- Annotator building tool for Jupyter☆22Updated last month
- ☆55Updated 5 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 2 months ago
- A collection of papers on automated medical coding from free-texts☆145Updated 6 months ago
- Library for clinical NLP with spaCy.☆581Updated 2 months ago
- init☆12Updated 7 months ago
- ☆14Updated 2 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆69Updated last week
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆76Updated 2 years ago
- ☆38Updated 3 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- Fast, world class biomedical NER☆87Updated 4 months ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆161Updated 3 years ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆100Updated last year