BIDS-Xu-Lab / Biomedical-NLP-BenchmarksLinks
Benchmark Datasets for BioNLP Tasks
☆14Updated 4 months ago
Alternatives and similar repositories for Biomedical-NLP-Benchmarks
Users that are interested in Biomedical-NLP-Benchmarks are comparing it to the libraries listed below
Sorting:
- System for Medical Concept Extraction and Linking☆414Updated last year
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 7 months ago
- ☆66Updated 4 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆333Updated 3 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 4 months ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆152Updated 2 years ago
- ☆55Updated 5 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆70Updated this week
- Medical Concept Annotation Tool☆509Updated last month
- Library for clinical NLP with spaCy.☆598Updated last month
- Python wraper for MetaMap☆173Updated 5 years ago
- Sample code that demonstrates the use of the NCBO REST services☆43Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆83Updated 3 months ago
- ☆18Updated 2 months ago
- ☆99Updated 3 years ago
- A collection of papers on automated medical coding from free-texts☆147Updated 9 months ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆100Updated last year
- ☆152Updated last year
- init☆12Updated 9 months ago
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆17Updated 3 years ago
- ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization☆29Updated 8 months ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆47Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Updated 3 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Updated 4 years ago
- ☆18Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32Updated last year
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- E3C is a freely available multilingual corpus (Italian, English, French, Spanish, and Basque) of semantically annotated clinical narrativ…☆26Updated last year
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆172Updated 3 years ago