BIDS-Xu-Lab / Biomedical-NLP-BenchmarksLinks
Benchmark Datasets for BioNLP Tasks
☆13Updated last month
Alternatives and similar repositories for Biomedical-NLP-Benchmarks
Users that are interested in Biomedical-NLP-Benchmarks are comparing it to the libraries listed below
Sorting:
- A Python Natural Language Processing Toolkit for Medical Text Generation☆81Updated last month
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated last month
- A Serverless Text Annotation Tool for Corpus Development☆56Updated 4 months ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- ☆98Updated 3 years ago
- A near real-time named-entity recognizer☆61Updated last year
- ☆23Updated 2 years ago
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆15Updated 3 years ago
- ☆55Updated 5 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- ☆18Updated last year
- ☆64Updated 4 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 3 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆68Updated this week
- System for Medical Concept Extraction and Linking☆405Updated 10 months ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆81Updated this week
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Python wraper for MetaMap☆174Updated 4 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- ☆217Updated 6 months ago
- A rule-based Python module for spitting documents into sections.☆12Updated 4 years ago
- Annotator building tool for Jupyter☆22Updated last week
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆330Updated 3 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆75Updated 2 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Blog post on Medium☆49Updated 2 years ago