Evotec-Bioinformatics / ml-from-omicsLinks
Code required to reproduce results from the book chapter "Machine learning from omics data" (Springer Protocols, 2021)
☆15Updated 2 years ago
Alternatives and similar repositories for ml-from-omics
Users that are interested in ml-from-omics are comparing it to the libraries listed below
Sorting:
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated 2 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 6 years ago
- ☆42Updated last year
- tidymass☆54Updated 3 weeks ago
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆67Updated 2 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated this week
- R package for the analysis of single-cell immune repertoires☆42Updated 4 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- A tool for large scale omics datasets evaluation☆25Updated last year
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆21Updated 3 years ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 3 years ago
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- Bayesian network plot for the enrichment analysis results☆64Updated 8 months ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆26Updated last year
- Code related to the Celligner manuscript☆46Updated 4 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆23Updated 6 years ago
- ☆38Updated last week
- An r package for proteomics data Analysis, developed from DEP.☆29Updated 2 months ago
- ☆27Updated 2 months ago
- ☆30Updated 2 years ago
- R package for analysing proteomics data☆49Updated 2 years ago
- A Transcriptomics-Proteomics Integration Pipeline☆17Updated last year
- Cancer Dependency Map package☆30Updated 9 months ago
- Easy and comprehensive biological network reconstruction and analysis☆29Updated 8 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 2 months ago
- The repo for LFQ-Analyst☆30Updated 10 months ago
- Pseudotime Analysis for Bulk Data☆15Updated 10 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated 11 months ago