Evotec-Bioinformatics / ml-from-omics
Code required to reproduce results from the book chapter "Machine learning from omics data" (Springer Protocols, 2021)
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ml-from-omics
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆58Updated 3 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆33Updated last week
- amica: an interactive and user-friendly web-based platform for the analysis of proteomics data☆23Updated last year
- A shiny-based web tool for interactive analysis of DepMap data☆22Updated 3 years ago
- R package for the analysis of single-cell immune repertoires☆41Updated 3 weeks ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 3 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆21Updated 3 years ago
- Functional Embedding of Gene Signatures☆36Updated 8 months ago
- ☆26Updated 11 months ago
- ☆16Updated 3 months ago
- repository for the single cell RNA-Seq workshop☆25Updated 3 years ago
- Workshop in omics integration and systems biology☆71Updated 3 weeks ago
- A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like pipeline toolkit for the R la…☆10Updated last month
- ☆14Updated last year
- ☆18Updated 2 years ago
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆61Updated last year
- tidymass☆53Updated 10 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 2 years ago
- Immunology-related bioinformatics data and tools☆69Updated 6 months ago
- A tool for large scale omics datasets evaluation☆24Updated last year
- ☆48Updated 4 months ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆31Updated last month
- R package for analysing proteomics data☆48Updated last year
- Quickomics: exploring omics data in an intuitive, interactive and informative manner☆39Updated last month
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆22Updated last week
- ☆18Updated 2 weeks ago
- Easy and comprehensive biological network reconstruction and analysis☆24Updated last month
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆10Updated 3 years ago