Tiling patches or generate patches of whole slide image based on Openslide
☆13Nov 20, 2020Updated 5 years ago
Alternatives and similar repositories for WSI_Extractor
Users that are interested in WSI_Extractor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.☆21Oct 3, 2023Updated 2 years ago
- Attention \ Saliency maps and features visualization for deep learning models in pytorch☆29Apr 29, 2020Updated 6 years ago
- Fixed-radius near neighbors search algorithm implemented in Python using Numba and Numpy for performance.☆13Apr 13, 2026Updated 3 weeks ago
- ☆10Jun 14, 2022Updated 3 years ago
- Whole Slide Images Segmentation using Patch UNet☆17Mar 30, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The implement for Comparison Detector: Convolutional Neural Networks for Cervical Cell Detection in the Limited-data Scenario.☆12Sep 6, 2022Updated 3 years ago
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Jul 3, 2021Updated 4 years ago
- Classification of Cervical Cells Using Hybrid Deep Feature Fusion Techniques.☆15Oct 19, 2021Updated 4 years ago
- color/stain normalization on histological images using Reinhard, Macenko and Vahadane methods☆16Dec 14, 2021Updated 4 years ago
- ☆13Apr 28, 2024Updated 2 years ago
- Step by Step ResUnet Model Architecture using Keras☆11Mar 2, 2022Updated 4 years ago
- some loss functions of image segmentation☆64Apr 22, 2020Updated 6 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- Based on our paper on "A Fuzzy Rank-based Ensemble of CNN Models for Classification of Cervical Cytology" published in Nature- Scientific…☆14Jul 21, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- GraphLSurv: A Scalable Survival Prediction Network with Adaptive and Sparse Structure Learning for Histopathological Whole-Slide Images -…☆12Aug 24, 2023Updated 2 years ago
- GPU-accelerated Stain Normalization and Augmentation in PyTorch☆43Feb 10, 2026Updated 2 months ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆57Sep 25, 2023Updated 2 years ago
- Pytorch code for: Min-max Entropy for Weakly Supervised Pointwise Localization☆17Oct 21, 2021Updated 4 years ago
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 6 years ago
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Jun 22, 2018Updated 7 years ago
- This is a reimplementation of ResUnet-a d6 with simple multitasking in keras/tensorflow 2.0☆14Apr 17, 2022Updated 4 years ago
- The Zhang's lab aims to provide a model or GUI of algorithm for example and further studies. ALL of them are used just for research, but…☆10Apr 13, 2020Updated 6 years ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Feb 15, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CNTK implementation of Fully Convolutional Networks (FCN) with ResNet for semantic segmentation☆12Aug 18, 2017Updated 8 years ago
- Plugin, that allows to pass commands to kitty window from neovim☆20Aug 4, 2023Updated 2 years ago
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Jul 3, 2020Updated 5 years ago
- I uploaded a rice on r/unixporn and now they're intimidating me to upload dotfiles or they will delete my rice in 12 hours.☆20Jan 9, 2024Updated 2 years ago
- Easy and comprehensive biological network reconstruction and analysis☆36Sep 15, 2025Updated 7 months ago
- Midnight - Pathology foundation models trained on orders of magnitude fewer WSIs☆34Nov 22, 2025Updated 5 months ago
- Tool to create images and configuration files for Minerva-Story☆16Dec 1, 2025Updated 5 months ago
- Handling whole-slide images with region-level annotations.☆10Jan 14, 2019Updated 7 years ago
- TCGA BLCA tmb prediction by Hongming Xu