Implementation of minimum edit distance algorithm for GPU.
☆14Jan 11, 2014Updated 12 years ago
Alternatives and similar repositories for med
Users that are interested in med are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The MASA-CUDAlign extension is used with the MASA architecture to align DNA sequences of unrestricted size with the Smith-Waterman/Needl…☆28Oct 22, 2021Updated 4 years ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 3 years ago
- ☆46Apr 13, 2022Updated 4 years ago
- MLE-Guided Parameter Search (AAAI 2021)☆12Sep 16, 2021Updated 4 years ago
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The code for the Subformer, from the EMNLP 2021 Findings paper: "Subformer: Exploring Weight Sharing for Parameter Efficiency in Generati…☆16Sep 1, 2021Updated 4 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- PyTorch implementation of Continuous Speech Separation☆12Oct 5, 2022Updated 3 years ago
- Automatically punctuate lecture transcripts obtained from YouTube.☆17Jun 12, 2020Updated 6 years ago
- Main repo to keep scripts, dockerfiles, wiki, etc☆15Mar 14, 2023Updated 3 years ago
- Directional sparse filtering for blind speech separation☆11Jun 8, 2021Updated 5 years ago
- Statistics on multilingual datasets☆17Jul 12, 2022Updated 4 years ago
- Predict edit intentions on Wikipedia☆19Jan 24, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- XmdvTool is an interactive data visualization toolkit for data anlytics☆12Sep 24, 2021Updated 4 years ago
- Vim theme inspired in andromeda.☆16May 25, 2020Updated 6 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆13Jul 31, 2026Updated last week
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 5 months ago
- Paper for release☆11Sep 24, 2021Updated 4 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Utility functions to extend and optimize GenomicRanges functionality.☆10Jul 9, 2026Updated last month
- ☆10Oct 25, 2019Updated 6 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆58Oct 8, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- LongSom tool for long-reads☆12May 20, 2025Updated last year
- ☆12Apr 18, 2022Updated 4 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- ☆12Oct 31, 2020Updated 5 years ago
- FusionInspector code☆63May 21, 2026Updated 2 months ago
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- bumble bee transformer☆14Apr 19, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- Signal Flow Graph Solver in javascript☆16Aug 5, 2012Updated 14 years ago
- Implementation of CTC alignment-based single step non-autoregressive transformer☆13Jun 2, 2023Updated 3 years ago
- ☆11Sep 17, 2020Updated 5 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 7 months ago
- ☆12Jul 14, 2022Updated 4 years ago
- ☆28Oct 6, 2020Updated 5 years ago