Modelling protein conformations with Alphafold3
☆16Jun 11, 2026Updated last month
Alternatives and similar repositories for afsample3
Users that are interested in afsample3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆65Mar 4, 2024Updated 2 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆11Jul 15, 2025Updated 11 months ago
- a lightweight distogram-prediction model trained via contrastive learning☆15May 3, 2026Updated 2 months ago
- ☆12Nov 22, 2024Updated last year
- The LoCoHD metric for protein-protein structure comparison☆15Oct 1, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆51May 29, 2026Updated last month
- ☆51Nov 29, 2025Updated 7 months ago
- Tool(s) for cleaning, munging and analysing PDB files for structural bioinformatics analysis.☆15May 29, 2019Updated 7 years ago
- A collection of tools that generate and analyse side-chain rotamer libraries☆10Updated this week
- ☆33Mar 2, 2026Updated 4 months ago
- The official implementation of the AAAI'24 paper Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer.☆12Dec 28, 2023Updated 2 years ago
- ☆12Dec 2, 2024Updated last year
- ESM-driven Pocket Cross Similarity☆17Aug 11, 2025Updated 11 months ago
- [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction☆34Mar 18, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ZDOCK predictions and PDB structures in C++ and Python☆15Jan 1, 2024Updated 2 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated last year
- Protein Structure Archiver☆15Sep 10, 2025Updated 10 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆176Jun 25, 2026Updated 2 weeks ago
- Official Github for "Molecular generative model via retrosynthetically prepared chemical building block assembly" (Advanced Science)☆36Mar 19, 2025Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆36May 28, 2024Updated 2 years ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Dec 14, 2023Updated 2 years ago
- A fast python class for reading 2-bit files (used by UCSC genome browser)☆14Jun 22, 2026Updated 3 weeks ago
- Protein-Protein Language Model with Novel Attention Mechanisms for Enhanced Inter-Protein Contact and Interaction Prediction☆61Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Latents-based conformational control in OpenFold3.☆73May 25, 2026Updated last month
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆227Jun 23, 2026Updated 3 weeks ago
- Scripts to add mmseqs MSA/templates to alphafold3 input json and also custom template files☆22Dec 4, 2024Updated last year
- diffusion model for protein sequence generation☆50Feb 18, 2023Updated 3 years ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated last month
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 3 months ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆324Nov 15, 2025Updated 8 months ago
- ☆11May 22, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- [ICLR 2025] Hotspot-Driven Peptide Design via Multi-Fragment Autoregressive Extension☆21May 5, 2025Updated last year
- ☆13Jun 7, 2024Updated 2 years ago
- ☆12May 3, 2025Updated last year
- Code for ColabDock paper☆157May 1, 2025Updated last year
- Spatiotemporal identification of druggable binding sites using deep learning☆22Mar 16, 2021Updated 5 years ago
- ☆13May 26, 2022Updated 4 years ago
- ☆13Mar 28, 2025Updated last year