rahi-lab / targettrack
User-friendly graphical interface for annotating 3D recordings of C. elegans and tracking neuronal activity
☆13Updated last week
Alternatives and similar repositories for targettrack:
Users that are interested in targettrack are comparing it to the libraries listed below
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- Tools for distributed alignment of massive images☆81Updated last month
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 4 years ago
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆76Updated this week
- A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.☆76Updated 3 years ago
- ☆23Updated 6 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated this week
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…☆29Updated last week
- The ImageJ framework for quantification of neuronal anatomy☆48Updated last week
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆64Updated 5 years ago
- ☆22Updated last year
- ☆22Updated 7 months ago
- 🌈☆54Updated this week
- ☆24Updated 3 months ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last week
- ☆20Updated last year
- Matlab function to import ROIs from ImageJ☆27Updated 5 years ago
- ☆37Updated last year
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆80Updated last week
- code of the registration and deconvolution project☆34Updated 3 years ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 5 months ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated last week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 9 months ago
- DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning☆107Updated 3 weeks ago
- ☆18Updated 2 years ago