SIMPLE 4.0: Computational Environment for Electron Microscopy Methods Development
☆28Oct 29, 2026Updated this week
Alternatives and similar repositories for SIMPLE
Users that are interested in SIMPLE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ThermoFisher Scientific Falcon 4 EER format description☆10Jan 4, 2024Updated 2 years ago
- ☆18Sep 20, 2022Updated 4 years ago
- RELION external reconstruct functionality☆12Sep 11, 2020Updated 6 years ago
- Two-Dimensional Template Matching implemented in Python☆16Sep 24, 2026Updated last month
- Makes RELION 3.1 Optics Groups from EPU AFIS data☆19May 8, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A CNN for denoising cryo-EM images☆14Dec 9, 2019Updated 6 years ago
- SerialEM mdoc files as pandas dataframes☆16Updated this week
- Badly written scripts for making cryoEM easier☆13Dec 15, 2020Updated 5 years ago
- The Swiss Army Knife for Editing Relion .STAR Files☆21Jul 1, 2024Updated 2 years ago
- A blazing-fast and type-safe STAR file IO powered by Rust☆13Sep 22, 2026Updated last month
- A deep manifold learning framework for 4D cryo-EM data processing for simultaneous determination of high-resolution structures and dynami…☆19Sep 12, 2022Updated 4 years ago
- Read and write files and manipulate data in the MRC2014 format☆17Oct 21, 2026Updated last week
- ☆20Jan 23, 2026Updated 9 months ago
- Colorblind-friendly, perceptually uniform palettes for chimerax☆14Sep 26, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cryo-EM micrograph segmentation through deep learning☆23Oct 10, 2025Updated last year
- Very simple script for EPU users which adds beam tilt classes to the star file☆11Nov 3, 2023Updated 2 years ago
- Cryo-EM data viewer in napari☆14Dec 1, 2020Updated 5 years ago
- macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames☆10Updated this week
- ☆16Jan 31, 2019Updated 7 years ago
- Graphical user interface to integrate cryoEM flexibility analyses with ChimeraX☆24Sep 5, 2024Updated 2 years ago
- A possible schema for cryoET geometry metadata☆12Aug 11, 2025Updated last year
- Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset☆34Sep 18, 2025Updated last year
- Ice gradient estimation for cryoEM☆11Oct 11, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- IMOD model files as pandas dataframes in Python☆14Oct 22, 2026Updated last week
- ManifoldEM Python suite☆17Nov 22, 2024Updated last year
- RECOVAR is a software for reconstructing and analyzing conformations from cryo-EM and cryo-ET datasets☆40Oct 21, 2026Updated last week
- ☆13Aug 4, 2017Updated 9 years ago
- Tools for user-free preprocessing of cryo-EM datasets☆28Nov 22, 2022Updated 3 years ago
- New program to follow Relion projects in a browser!☆48Jan 5, 2026Updated 9 months ago
- FOSSIL, FOrtran Stereo (si) Litography parser☆17Oct 8, 2026Updated 3 weeks ago
- EM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. I…☆18Mar 4, 2025Updated last year
- MapQ is a plugin for UCSF Chimera to calculate Q-scores of an atomic model in a cryoEM map.☆17Aug 26, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A GPU and CPU accelerated python package for aligning tomography datasets.☆15Sep 14, 2026Updated last month
- ☆10Apr 30, 2024Updated 2 years ago
- GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …☆13Apr 7, 2023Updated 3 years ago
- Amortized inference for ab initio heterogeneous cryo-EM reconstruction☆43Apr 11, 2023Updated 3 years ago
- Scripts and Tools for Electron Microscopy Image Analysis.☆11Jul 27, 2026Updated 3 months ago
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆25Sep 30, 2026Updated last month
- ☆14Sep 26, 2019Updated 7 years ago