cramerlab / boxnetLinks
BoxNet implemented in TensorFlow and all current training data
☆32Updated 6 years ago
Alternatives and similar repositories for boxnet
Users that are interested in boxnet are comparing it to the libraries listed below
Sorting:
- This code accompanies "Differentiable probabilistic models of scientific imaging with the Fourier slice theorem", UAI 2019☆37Updated 6 years ago
- ☆57Updated last year
- Molecular dynamics trajectory analysis in Tensorflow☆37Updated 8 years ago
- Reliable estimation of membrane curvature for cryo-electron tomography☆21Updated 6 months ago
- A Deep Architecture for Synapse Detection in Multiplexed Fluorescence Images☆14Updated 6 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆77Updated 4 years ago
- A deep manifold learning framework for 4D cryo-EM data processing for simultaneous determination of high-resolution structures and dynami…☆18Updated 3 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆59Updated 3 years ago
- Graph Representation Analysis for Connected Embeddings☆34Updated last year
- A scientific image processing software suite with a focus on CryoEM and CryoET☆164Updated this week
- High Throughput Electron Microscopy Image Processing Software☆41Updated 3 months ago
- ☆70Updated 2 years ago
- Implementation of Lie Transformer, Equivariant Self-Attention, in Pytorch☆97Updated 4 years ago
- UCSF BMI219 Deep Learning (2017), Coding example (Prediction of protein folding with RNN and CNN)☆16Updated 8 years ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- These are programs that deal with anisotropy (both resolution and sampling)☆22Updated 7 years ago
- This is the source code for the paper DeepPicker.☆32Updated 8 years ago
- Energy-based models for atomic-resolution protein conformations☆103Updated 3 years ago
- JAXChem is a JAX-based deep learning library for complex and versatile chemical modeling☆81Updated 5 years ago
- Experiments in protein folding through language modeling☆10Updated 4 years ago
- ☆34Updated 5 years ago
- A Docker-based distribution of Appion-Protomo.☆11Updated 5 years ago
- 3D Roto-translation equivariant convolutions☆54Updated 7 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 3 years ago
- An experimental repo for experimenting with PyTorch models☆37Updated 2 years ago
- CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The …☆13Updated last week
- Public release of Ptolemy package for automated targeting of Cryo-EM grids☆18Updated 10 months ago
- To be a next-generation DL-based phenotype prediction from genome mutations.☆19Updated 4 years ago
- Implementation of "Semi-supervised learning of hierarchical representations of molecules using neural message passing" (arXiv:1711.10168)☆14Updated 7 years ago
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Updated 5 years ago