lassoan / SlicerTotalSegmentatorView external linksLinks
Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model
☆241Oct 9, 2025Updated 4 months ago
Alternatives and similar repositories for SlicerTotalSegmentator
Users that are interested in SlicerTotalSegmentator are comparing it to the libraries listed below
Sorting:
- Tool for robust segmentation of >100 important anatomical structures in CT and MR images☆2,468Feb 5, 2026Updated last week
- Extension for 3D Slicer for running MONAI Auto3DSeg models☆113Oct 14, 2025Updated 4 months ago
- MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemi…☆306Jan 20, 2026Updated 3 weeks ago
- 3D Slicer nnUNet integration to streamline usage for nnUNet based AI extensions.☆56Jun 24, 2025Updated 7 months ago
- Many additional segmentation tools for 3D Slicer's Segment Editor☆49Sep 22, 2025Updated 4 months ago
- Collection of utilities that are not polished implementations but can be useful to users☆94Feb 4, 2026Updated last week
- A 3D Slicer extension for efficient segmentation with nnInteractive.☆126Jan 23, 2026Updated 3 weeks ago
- MONAI Label is an intelligent open source image labeling and learning tool.☆810Feb 7, 2026Updated last week
- ☆391Jun 23, 2025Updated 7 months ago
- Template to be used as a starting point for creating a custom 3D Slicer application☆67Jan 23, 2026Updated 3 weeks ago
- Convert the TotalSegmentator dataset into the nnUNet format☆19Aug 1, 2023Updated 2 years ago
- docker config files for slicer☆23Jul 3, 2023Updated 2 years ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆32Feb 13, 2024Updated 2 years ago
- Multi-platform, free open source software for visualization and image computing.☆2,312Updated this week
- 3D Slicer Module for connecting to model repository and use models for image analysis.☆27Oct 5, 2023Updated 2 years ago
- Extension to import microCT data and conduct 3D morphometrics in Slicer☆115Dec 18, 2025Updated last month
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆42Jan 15, 2026Updated 3 weeks ago
- Materials for the yearly PerkLab bootcamp course☆96Jul 29, 2025Updated 6 months ago
- ☆15Feb 12, 2025Updated last year
- Slicer extension for TOMAAT☆17Jun 18, 2024Updated last year
- A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.☆253Jul 20, 2025Updated 6 months ago
- This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.☆36Jun 7, 2025Updated 8 months ago
- Extension for 3D Slicer that allows the application to be used from Jupyter notebook☆258Aug 9, 2024Updated last year
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆81Jan 26, 2026Updated 2 weeks ago
- ☆156Jan 20, 2026Updated 3 weeks ago
- ☆8,011Feb 4, 2026Updated last week
- Official Implementation of ECONet: Efficient Convolutional Online Likelihood Network for Interactive Segmentation☆17Mar 28, 2023Updated 2 years ago
- Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterat…☆85Jan 29, 2026Updated 2 weeks ago
- Website for NA-MIC Project Weeks☆92Feb 4, 2026Updated last week
- A multilabel lymph node segmentation dataset from contrast CT☆26Jul 29, 2025Updated 6 months ago
- [NeurIPS 2023] AbdomenAtlas 1.0 (5,195 CT volumes + 9 annotated classes)☆298Nov 24, 2025Updated 2 months ago
- A 3D Slicer integration to Meta's SAM.☆249Mar 30, 2024Updated last year
- [MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.☆480Nov 2, 2024Updated last year
- ☆42Jul 27, 2023Updated 2 years ago
- MUltiple SUV Thresholding (MUST)-segmenter is a semi-automated PET image segmentation tool that enables delineation of multiple lesions a…☆12May 14, 2025Updated 9 months ago
- The official implementation of "Enhancing Representation in Radiography-Reports Foundation Model: A Granular Alignment Algorithm Using Ma…☆13Sep 13, 2024Updated last year
- 3D Slicer extension for accessing HD-BET brain extraction tool for skull stripping in brain MRI images.☆26Jan 20, 2025Updated last year
- ITK-SNAP medical image segmentation tool☆417Oct 27, 2025Updated 3 months ago
- uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)☆208Jan 28, 2026Updated 2 weeks ago