ogchen / nanofoldLinks
A nano protein structure prediction model based on DeepMind's AlphaFold paper
☆32Updated last year
Alternatives and similar repositories for nanofold
Users that are interested in nanofold are comparing it to the libraries listed below
Sorting:
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆267Updated last month
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆121Updated 2 months ago
- Protein language model customized for antibodies☆146Updated 8 months ago
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆99Updated last month
- Making folding experiments more accessible .☆89Updated 4 months ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆71Updated 4 months ago
- Implementation of the Pairformer model used in AlphaFold 3☆14Updated last week
- A fully open source biomolecular structure prediction model based on AlphaFold3☆458Updated last week
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆214Updated 5 months ago
- A language agent gym with challenging scientific tasks☆219Updated last month
- Ankh: Optimized Protein Language Model☆237Updated 5 months ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆195Updated 4 months ago
- Framework enabling modular interchange of language agents, environments, and optimizers☆116Updated this week
- Benchmark for LLM-based Agents in Computational Biology☆65Updated 2 months ago
- Pretraining Code for METAGENE-1☆68Updated 11 months ago
- A scientific reasoning model, dataset, and reward functions for chemistry.☆148Updated last month
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆52Updated 2 years ago
- Your favourite classical machine learning algos on the GPU/TPU☆20Updated 11 months ago
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆407Updated last year
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆156Updated 4 months ago
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆55Updated 2 years ago
- Combinatorial antibiotic generation☆191Updated last month
- A Modular Architecture for Deep Learning Systems☆49Updated 6 months ago
- LLM for Drug Editing, ICLR 2024☆155Updated last year
- bioinformatics tools running on modal☆112Updated last month
- Source code of the Stanford Ribonanza RNA Folding first place solution☆41Updated last year
- ML-guided enzyme engineering☆68Updated last month
- Minimal AlphaFold☆55Updated last year
- The gzip classification method implemented for molecule classification.☆55Updated 3 weeks ago
- ☆72Updated last year