Alternatives and similar repositories for BinaryCIF

Users that are interested in BinaryCIF are comparing it to the libraries listed below

• PDBeurope / ccdutils
  A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…
  ☆60Updated 4 months ago
• rasbt / Hbind
  Calculates hydrogen-bond interaction tables for protein-small molecule complexes, based on protein PDB and protonated ligand MOL2 structu…
  ☆28Updated 5 years ago
• PDBeurope / pdbecif
  A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"
  ☆38Updated last year
• biocryst / biozernike
  Protein structure descriptors and alignment based on 3D Zernike moments.
  ☆36Updated last year
• MolQL / molql
  Molecular Query Language
  ☆33Updated last year
• cusbg / prankweb
  Web application for protein-ligand binding sites analysis and visualization
  ☆16Updated last month
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 3 years ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆100Updated 10 months ago
• pstansfeld / MemProtMD
  ☆45Updated 2 months ago
• uw-ipd / tmol
  TMol
  ☆39Updated this week
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆87Updated 4 years ago
• yakomaxa / PyMOL-Wasm
  PyMOL-wasm port's binary and html/javascript code
  ☆27Updated last year
• freesasa / freesasa-python
  FreeSASA Python Module
  ☆55Updated last year
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆64Updated 3 months ago
• kliment-olechnovic / voronota
  Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic b…
  ☆35Updated last week
• KULL-Centre / CALVADOS
  ☆67Updated last month
• rcsb / py-mmcif
  mmCIF Core Access Library
  ☆46Updated last week
• Psivant / stormm
  STORMM: Structure and TOpology Replica Molecular Mechanics
  ☆73Updated last month
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆71Updated last month
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated last month
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆47Updated last month
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆30Updated 2 weeks ago
• bowman-lab / enspara
  Modeling molecular ensembles with scalable data structures and parallel computing
  ☆36Updated last week
• PDB-REDO / libcifpp
  Library containing code to manipulate mmCIF and PDB files
  ☆35Updated last month
• Becksteinlab / propkatraj
  pKa estimates for proteins using an ensemble approach
  ☆28Updated this week
• ExcitedStates / qfit-3.0
  qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.
  ☆45Updated 3 weeks ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆88Updated last month
• Boehringer-Ingelheim / pyPept
  pyPept: a python library to generate atomistic 2D and 3D representations of peptides
  ☆73Updated 10 months ago
• gph82 / mdciao
  mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data
  ☆35Updated last week
• maccallumlab / meld
  Modeling with limited data
  ☆59Updated last week